YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170520595, gi...
Organism:	Escherichia coli SMS-3-5
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170520595, gi....

Description	E-value	Query Range	Subject Range
gi\|75704791, gi\|... - gi\|75911066\|ref\|YP_325362.1\| transcriptional regulator/antitoxin MazE [Anabaena variabilis ATCC 2941...	105.0	[0..2]	[82..1]
gi\|17132307, gi\|... - gi\|17230704\|ref\|NP_487252.1\| cell growth regulatory protein [Nostoc sp. PCC 7120], gi\|17132307\|dbj\|B... gi\|25532381 - pir\|\|AE2207 cell growth regulatory protein mazE [imported] - Nostoc sp. (strain PCC 7120)	104.0	[0..2]	[82..1]
gi\|6458096, gi\|1... - gi\|6458096\|gb\|AAF09994.1\|AE001901_9 ppGpp-regulated growth inhibitor suppressor ChpR/MazE, putative ... gi\|7473639 - pir\|\|A75523 probable ppGpp-regulated growth inhibitor suppressor ChpR/ MazE - Deinococcus radioduran...	101.0	[0..2]	[82..1]
gi\|31616033 - gi\|31616033\|pdb\|1UB4\|C Chain C, Crystal Structure Of Mazef Complex	100.0	[0..1]	[82..4]
gi\|115518151, gi... - gi\|77740482\|ref\|ZP_00808969.1\| SpoVT/AbrB-like [Rhodopseudomonas palustris BisA53], gi\|77699528\|gb\|E...	95.0	[0..2]	[81..1]
gi\|88792333, gi\|... - gi\|88810703\|ref\|ZP_01125960.1\| PemI-like suppressor of inhibitory function of ChpA [Nitrococcus mobi...	94.0	[0..2]	[80..6]
gi\|78188406, gi\|... - gi\|78188406\|ref\|YP_378744.1\| transcriptional regulator/antitoxin, MazE [Chlorobium chlorochromatii C...	92.0	[0..2]	[82..1]
gi\|24195433, gi\|... - gi\|24214480\|ref\|NP_711961.1\| ppGpp-regulated growth inhibitor suppressor ChpR/ MazE [Leptospira inte...	91.0	[0..2]	[82..1]
gi\|83589868, gi\|... - gi\|83589868\|ref\|YP_429877.1\| transcriptional regulator/antitoxin, MazE [Moorella thermoacetica ATCC ...	91.0	[0..2]	[82..5]
gi\|68550788, gi\|... - gi\|68550788\|ref\|ZP_00590227.1\| SpoVT/AbrB-like [Pelodictyon phaeoclathratiforme BU-1], gi\|68242313\|g...	91.0	[0..2]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHSSVKRWG NSPAVRIPAT LMQALNLNID DEVKIDLVDG KLIIEPVRKE PVFTLAELVN  60
   61 DITPENLHEN IDWGEPKDKE VW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits