YRC Public Data Repository - Protein Structure Prediction

Protein:	ARNC_ECODH
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	322 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARNC_ECODH.

Description	E-value	Query Range	Subject Range
gi\|75238042, gi\|... - gi\|75238042\|ref\|ZP_00722047.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche...	262.0	[0..1]	[322..1]
gi\|209765366, gi... - pir\|\|E85865 probable sugar transferase Z3512 [imported] - Escherichia coli (strain O157:H7, substrai... gi\|208738905, gi... - gi\|208818782\|ref\|ZP_03259102.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|254794149, gi... - gi\|254794149\|ref\|YP_003078986.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Esc... gi\|208814420, gi... - gi\|208814420\|ref\|ZP_03255749.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|12516600, gi\|... - gi\|15802803\|ref\|NP_288830.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esc... gi\|208728519, gi... - gi\|208808718\|ref\|ZP_03251055.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO57 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O157:H7 GN=ar... gi\|195935633 - gi\|195935633\|ref\|ZP_03081015.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|217327398, gi... - gi\|217327398\|ref\|ZP_03443481.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO5E - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O157:H7 (stra... gi\|189362984, gi... - gi\|189362984\|gb\|EDU81403.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189368273, gi... - gi\|189368273\|gb\|EDU86689.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189357690, gi... - gi\|189357690\|gb\|EDU76109.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168749665, gi... - gi\|188016122\|gb\|EDU54244.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189378876, gi... - gi\|189378876\|gb\|EDU97292.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168787164, gi... - gi\|189372799\|gb\|EDU91215.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189001895, gi... - gi\|189001895\|gb\|EDU70881.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168773018, gi... - gi\|187771016\|gb\|EDU34860.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|15832396, gi\|... - gi\|15832396\|ref\|NP_311169.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esc...	261.0	[0..1]	[322..1]
gi\|75243069, gi\|... - gi\|75243069\|ref\|ZP_00726775.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... ARNC_ECOL5 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6:K15:H31 (s... ARNC_ECOK1 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O1:K1 / APEC ... ARNC_ECOUT - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain UTI89... gi\|227835663, gi... - gi\|227887313\|ref\|ZP_04005118.1\| glycosyltransferase [Escherichia coli 83972], gi\|227835663\|gb\|EEJ461... ARNC_ECOL6 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6:H1 (strain... gi\|226901098, gi... - gi\|237704732\|ref\|ZP_04535213.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO45 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O45:K1 (strai... ARNC_ECOL6 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6 GN=arnC PE... ARNC_ECO81 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O81 (strain E...	261.0	[0..1]	[322..1]
ARNC_ECO8A - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O8 (strain IA... gi\|193062339, gi... - gi\|75259717\|ref\|ZP_00731019.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... gi\|194427160, gi... - gi\|75211662\|ref\|ZP_00711741.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... ARNC_ECO24 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O139:H28 (str...	259.0	[0..1]	[322..1]
gi\|24113630, gi\|... - gi\|24113630\|ref\|NP_708140.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Shi... ARNC_SHIFL - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Shigella flexneri GN=arnC PE=3...	258.0	[0..1]	[322..1]
ARNC_SHIF8 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Shigella flexneri serotype 5b ...	258.0	[0..1]	[322..1]
gi\|30041940, gi\|... - gi\|30063685\|ref\|NP_837856.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Shi...	257.0	[0..1]	[322..1]
ARNC_YERPB - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis se... ARNC_YERPY - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis se... ARNC_YERPP - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pestis (strain Pestoi... ARNC_YERPS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis se... ARNC_YERPS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis GN...	255.0	[0..1]	[321..1]
gi\|77962216 - gi\|77962216\|ref\|ZP_00826039.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	254.0	[0..1]	[321..1]
gi\|218929509, gi... - gi\|218929509\|ref\|YP_002347384.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase ... gi\|167056031, gi... - gi\|167424844\|ref\|ZP_02316597.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (... gi\|45441998, gi\|... - gi\|45441998\|ref\|NP_993537.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Yer... gi\|167469209 - gi\|167469209\|ref\|ZP_02333913.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_YERPG - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pestis bv. Antiqua (s... gi\|229688055, gi... - gi\|229898507\|ref\|ZP_04513652.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Yers... gi\|229895106, gi... - gi\|229895106\|ref\|ZP_04510282.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Yers... gi\|229837946, gi... - gi\|229837946\|ref\|ZP_04458105.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Yers... gi\|165920538, gi... - gi\|165927483\|ref\|ZP_02223315.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (... gi\|89105347, gi\|... - gi\|89105347\|ref\|ZP_01177868.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi... gi\|165989302, gi... - gi\|166011837\|ref\|ZP_02232735.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (... ARNC_YERPA - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pestis bv. Antiqua (s... gi\|166211162, gi... - gi\|166211162\|ref\|ZP_02237197.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (... ARNC_YERPN - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pestis bv. Antiqua (s... gi\|167049765, gi... - gi\|167400912\|ref\|ZP_02306418.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (... gi\|166958944, gi... - gi\|167422132\|ref\|ZP_02313885.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase (... gi\|149365671, gi... - gi\|149365671\|ref\|ZP_01887706.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Yers... gi\|21958738, gi\|... - gi\|22125811\|ref\|NP_669234.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Yer... ARNC_YERPE - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pestis GN=arnC PE=3 S...	253.0	[0..1]	[321..1]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEIHPVKKV SVVIPVYNEQ ESLPELIRRT TTACESLGKE YEILLIDDGS SDNSAHMLVE  60
   61 ASQAENSHIV SILLNRNYGQ HSAIMAGFSH VTGDLIITLD ADLQNPPEEI PRLVAKADEG 120
  121 YDVVGTVRQN RQDSWFRKTA SKMINRLIQR TTGKAMGDYG CMLRAYRRHI VDAMLHCHER 180
  181 STFIPILANI FARRAIEIPV HHAEREFGES KYSFMRLINL MYDLVTCLTT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2d7iA
Description:	No description for 2d7iA was found.

Predicted Domain #2

Region A:
Residues: [231-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPLRMLSLLG SIIAIGGFSI AVLLVILRLT FGPQWAAEGV FMLFAVLFTF IGAQFIGMGL  60
   61 LGEYIGRIYT DVRARPRYFV QQVIRPSSKE NE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits