YRC Public Data Repository - Protein Structure Prediction

Protein:	LSPA_ECODH
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSPA_ECODH.

Description	E-value	Query Range	Subject Range
gi\|114773698 - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255] gi\|221135354 - gi\|221135354\|ref\|ZP_03561657.1\| signal peptidase II [Glaciecola sp. HTCC2999] gi\|114773698, gi... - gi\|114773698\|ref\|ZP_01450729.1\| signal peptidase II [alpha proteobacterium HTCC2255], gi\|114546093\|g...	182.0	[0..5]	[163..22]
LSPA_SHELP - Lipoprotein signal peptidase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=lspA PE=3 SV=1	181.0	[0..1]	[163..1]
LSPA_ALTMD - Lipoprotein signal peptidase OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 ... LSPA_ALTMD - Lipoprotein signal peptidase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=lspA1 PE=...	177.0	[0..1]	[164..1]
gi\|74277650, gi\|... - gi\|75428558\|ref\|ZP_00731760.1\| Signal peptidase II [Actinobacillus succinogenes 130Z], gi\|74277650\|g...	175.0	[0..6]	[162..29]
gi\|77976920 - gi\|77976920\|ref\|ZP_00832385.1\| COG0597: Lipoprotein signal peptidase [Yersinia intermedia ATCC 29909...	175.0	[0..1]	[162..1]
gi\|77976150 - gi\|77976150\|ref\|ZP_00831683.1\| COG0597: Lipoprotein signal peptidase [Yersinia frederiksenii ATCC 33...	174.0	[0..1]	[162..1]
LSPA_YERPB - Lipoprotein signal peptidase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=lspA PE=3 ... gi\|115346284, gi... - gi\|218927673\|ref\|YP_002345548.1\| lipoprotein signal peptidase [Yersinia pestis CO92], gi\|16120805\|re... LSPA_YERPS - Lipoprotein signal peptidase OS=Yersinia pseudotuberculosis GN=lspA PE=3 SV=1 gi\|150260488, gi... - gi\|150260488\|ref\|ZP_01917216.1\| lipoprotein signal peptidase [Yersinia pestis CA88-4125], gi\|1492898... LSPA_YERPP - Lipoprotein signal peptidase OS=Yersinia pestis (strain Pestoides F) GN=lspA PE=3 SV=1 LSPA_YERPE - Lipoprotein signal peptidase OS=Yersinia pestis GN=lspA PE=3 SV=1 gi\|165920790, gi... - gi\|165927328\|ref\|ZP_02223160.1\| signal peptidase II [Yersinia pestis biovar Orientalis str. F1991016... gi\|166008717, gi... - gi\|166008717\|ref\|ZP_02229615.1\| signal peptidase II [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|166206982, gi... - gi\|166212236\|ref\|ZP_02238271.1\| signal peptidase II [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167048984, gi... - gi\|167401602\|ref\|ZP_02307096.1\| signal peptidase II [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|167419338, gi... - gi\|167419338\|ref\|ZP_02311091.1\| signal peptidase II [Yersinia pestis biovar Orientalis str. MG05-102... gi\|167426113, gi... - gi\|167426113\|ref\|ZP_02317866.1\| signal peptidase II [Yersinia pestis biovar Mediaevalis str. K197300... LSPA_YERPY - Lipoprotein signal peptidase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=lspA PE=3... gi\|165937891, gi... - gi\|89102801\|ref\|ZP_01175410.1\| COG0597: Lipoprotein signal peptidase [Yersinia pestis biovar Orienta... LSPA_YERPA - Lipoprotein signal peptidase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=lspA PE=3 SV=1 LSPA_YERPN - Lipoprotein signal peptidase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=lspA PE=3 SV=1 LSPA_YERPG - Lipoprotein signal peptidase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=lspA PE=3 SV=1 gi\|229690753, gi... - gi\|229842443\|ref\|ZP_04462598.1\| prolipoprotein signal peptidase (signal peptidase II) [Yersinia pest... gi\|229840363, gi... - gi\|229840363\|ref\|ZP_04460522.1\| prolipoprotein signal peptidase (signal peptidase II) [Yersinia pest... gi\|229705885, gi... - gi\|229836942\|ref\|ZP_04457107.1\| prolipoprotein signal peptidase (signal peptidase II) [Yersinia pest... gi\|22127573, gi\|... - gi\|22127573\|ref\|NP_670996.1\| lipoprotein signal peptidase [Yersinia pestis KIM], gi\|21960679\|gb\|AAM8... LSPA_YERPS - Lipoprotein signal peptidase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=lspA PE=3... gi\|45443436, gi\|... - gi\|45443436\|ref\|NP_994975.1\| lipoprotein signal peptidase [Yersinia pestis biovar Microtus str. 9100...	174.0	[0..1]	[163..1]
gi\|90580542, gi\|... - gi\|90580542\|ref\|ZP_01236347.1\| signal peptidase II [Vibrio angustum S14], gi\|90438200\|gb\|EAS63386.1\|...	174.0	[0..2]	[163..9]
gi\|77959745 - gi\|77959745\|ref\|ZP_00823762.1\| COG0597: Lipoprotein signal peptidase [Yersinia bercovieri ATCC 43970...	174.0	[0..1]	[162..1]
LSPA_SHIFL - Lipoprotein signal peptidase OS=Shigella flexneri GN=lspA PE=3 SV=1 gi\|30061595, gi\|... - gi\|30061595\|ref\|NP_835766.1\| lipoprotein signal peptidase [Shigella flexneri 2a str. 2457T], gi\|3003... gi\|24050222, gi\|... - gi\|24111472\|ref\|NP_705982.1\| lipoprotein signal peptidase [Shigella flexneri 2a str. 301], gi\|240502...	174.0	[0..1]	[164..1]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSICSTGL RWLWLVVVVL IIDLGSKYLI LQNFALGDTV PLFPSLNLHY ARNYGAAFSF  60
   61 LADSGGWQRW FFAGIAIGIS VILAVMMYRS KATQKLNNIA YALIIGGALG NLFDRLWHGF 120
  121 VVDMIDFYVG DWHFATFNLA DTAICVGAAL IVLEGFLPSR AKKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	89.958607
Match:	PF01252.9
Description:	No description for PF01252.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits