YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27066008, gi\|...
Organism:	Homo sapiens
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27066008, gi|....

Description	E-value	Query Range	Subject Range
gi\|50738954 - gi\|50738954\|ref\|XP_419342.1\| PREDICTED: similar to ras-related protein [Gallus gallus]	204.0	[0..3]	[169..196]
gi\|114675154 - gi\|114675154\|ref\|XP_001147785.1\| PREDICTED: similar to GTP-binding protein RAB11B [Pan troglodytes]	204.0	[0..2]	[169..137]
gi\|109081641 - gi\|109081641\|ref\|XP_001103732.1\| PREDICTED: similar to RAB11a, member RAS oncogene family [Macaca mu...	203.0	[0..2]	[169..95]
rab-1 - RAS-related protein status:Confirmed UniProt:Q9UAQ6 protein_id:AAC69218.1	203.0	[0..2]	[168..7]
CRE16067, FL81_1... - RP15185 WBGene00061078 locus:Cre-rab-1 status:Confirmed, null gi\|157761211 - gi\|157761211\|ref\|XP_001672948.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae AF16] gi\|39588485, gi\|... - gi\|39588485\|emb\|CAE58008.1\| Hypothetical protein CBG01077 [Caenorhabditis briggsae], gi\|187038224\|em...	202.0	[0..2]	[168..7]
gi\|303734, gi\|738942 - gi\|738942\|prf\|\|2001457K GTP-binding protein, gi\|303734\|dbj\|BAA02118.1\| GTP-binding protein [Pisum sa... gi\|1098293, gi\|4... - pir\|\|S41430 GTP-binding protein, ras-like (clone vfa-ypt1) - fava bean, gi\|452359\|emb\|CAA82707.1\| g...	202.0	[0..2]	[169..4]
gi\|109511883 - gi\|109511883\|ref\|XP_001061706.1\| PREDICTED: similar to Ras-related protein Rab-1B [Rattus norvegicus...	202.0	[0..2]	[169..91]
gi\|47211161 - gi\|47211161\|emb\|CAF92536.1\| unnamed protein product [Tetraodon nigroviridis]	202.0	[0..2]	[169..4]
YPT1_PHYIN - Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1	201.0	[0..2]	[169..4]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNKICQFKLV LLGESAVGKS SLVLRFVKGQ FHEFQESTIG AAFLTQTVCL DDTTVKFEIW  60
   61 DTAGQERYHS LAPMYYRGAQ AAIVVYDITN EESFARAKNW VKELQRQASP NIVIALSGNK 120
  121 ADLANKRAVD FQEAQSYADD NSLLFMETSA KTSMNVNEIF MAIAKKLPKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	2heiA
Description:	No description for 2heiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits