YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|40889544, gi\|...
Organism:	Homo sapiens
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|40889544, gi|....

Description	E-value	Query Range	Subject Range
gi\|73977946 - gi\|73977946\|ref\|XP_532595.2\| PREDICTED: similar to Actin-binding protein IPP (MIPP protein) [Canis f...	137.0	[0..2]	[124..9]
gi\|47215945 - gi\|47215945\|emb\|CAF96347.1\| unnamed protein product [Tetraodon nigroviridis]	136.0	[0..2]	[124..22]
gi\|109477063, gi... - gi\|164663895\|ref\|NP_001100149.2\| intracisternal A particle-promoted polypeptide [Rattus norvegicus],...	136.0	[0..2]	[124..9]
gi\|109018850 - gi\|109018850\|ref\|XP_001094324.1\| PREDICTED: similar to kelch-like 12 [Macaca mulatta]	135.0	[0..10]	[125..147]
IPP - intracisternal A particle-promoted polypeptide gi\|114556305, gi... - gi\|114556307\|ref\|XP_001159465.1\| PREDICTED: intracisternal A particle-promoted polypeptide isoform 4...	134.0	[0..2]	[124..9]
gi\|114556301 - gi\|114556301\|ref\|XP_001159408.1\| PREDICTED: intracisternal A particle-promoted polypeptide isoform 3...	134.0	[0..2]	[124..9]
IPP_MOUSE - Actin-binding protein IPP OS=Mus musculus GN=Ipp PE=2 SV=3 gi\|162319544 - gi\|162319544\|gb\|AAI56829.1\| IAP promoted placental gene [synthetic construct]	134.0	[0..2]	[124..9]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSADSQIQFT RHASDVLLNL NRLRSRDILT DVVIVVSREQ FRAHKTVLMA CSGLFYSIFT  60
   61 DQLKRNLSVI NLDPEINPEG FNILLDFMYT SRLNLREGNI MAVMATAMYL QMEHVVDTCR 120
  121 KFIKASE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.39794
Match:	1r28A
Description:	Crystal Structure of the B-Cell Lymphoma 6 (BCL6) BTB domain to 2.2 Angstrom
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.03849401453298	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: