YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39654736, gi\|...
Organism:	Escherichia coli
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39654736, gi|....

Description	E-value	Query Range	Subject Range
gi\|39654381, gi\|... - gi\|39654382\|pdb\|1OSB\|C Chain C, Conjugative Relaxase Trwc In Complex With Orit Dna. Metal- Free Stru...	301.0	[0..2]	[293..2]
gi\|12060331, gi\|... - gi\|12084961\|ref\|NP_073254.1\| hypothetical protein pKDSC50_p30 [Salmonella enterica subsp. enterica s...	281.0	[0..6]	[293..11]
gi\|18150978, gi\|... - gi\|18150978\|ref\|NP_542915.1\| putative TraC protein [Pseudomonas putida], gi\|18077219\|emb\|CAC86855.1\|...	280.0	[0..7]	[292..6]
gi\|75707034, gi\|... - gi\|75707034\|gb\|ABA25997.1\| TraI [Pseudomonas sp. CT14], gi\|190572051\|ref\|YP_001966297.1\| TraI [Pseud...	280.0	[0..7]	[292..7]
gi\|45359319, gi\|... - gi\|60115495\|ref\|YP_209287.1\| TraI protein [Salmonella enterica subsp. enterica serovar Choleraesuis ...	280.0	[0..6]	[293..11]

Back

Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XLSHXVLTRQ DIGRAASYYE DGADDYYAKD GDASEWQGKG AEELGLSGEV DSKRFRELLA  60
   61 GNIGEGHRIX RSATRQDSKE RIGLDLTFSA PKSVSLQALV AGDAEIIKAH DRAVARTLEQ 120
  121 AEARAQARQK IQGKTRIETT GNLVIGKFRH ETSRERDPQL HTHAVILNXT KRSDGQWRAL 180
  181 KNDEIVKATR YLGAVYNAEL AHELQKLGYQ LRYGKDGNFD LAHIDRQQIE GFSKRTEQIA 240
  241 EWYAARGLDP NSVSLEQKQA AKVLSRAKKT SVDREALRAE WQATAKELGI DFS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	1omhA
Description:	Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits