YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|217068032, gi...
Organism:	Bacillus cereus AH187
Length:	73 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|217068032, gi....

Description	E-value	Query Range	Subject Range
gi\|75760168, gi\|... - gi\|75760168\|ref\|ZP_00740226.1\| Spore germination protein PA [Bacillus thuringiensis serovar israelen... gi\|118415957, gi... - gi\|118476732\|ref\|YP_893883.1\| spore germination protein PA [Bacillus thuringiensis str. Al Hakam], g...	106.0	[0..1]	[73..4]
gi\|228788480, gi... - gi\|228971245\|ref\|ZP_04131874.1\| spore germination protein gerPA [Bacillus thuringiensis serovar thur... gi\|228957518, gi... - gi\|228957518\|ref\|ZP_04119270.1\| spore germination protein gerPA [Bacillus thuringiensis serovar paki... gi\|228984318, gi... - gi\|228984318\|ref\|ZP_04144499.1\| spore germination protein gerPA [Bacillus thuringiensis serovar toch... gi\|47555803, gi\|... - gi\|47567608\|ref\|ZP_00238319.1\| spore germination protein PA-related protein [Bacillus cereus G9241],... gi\|228781872, gi... - gi\|228977854\|ref\|ZP_04138236.1\| spore germination protein gerPA [Bacillus thuringiensis Bt407], gi\|2... gi\|228714311, gi... - gi\|229068803\|ref\|ZP_04202099.1\| spore germination protein gerPA [Bacillus cereus F65185], gi\|2287143... gi\|228726330, gi... - gi\|229042990\|ref\|ZP_04190721.1\| spore germination protein gerPA [Bacillus cereus AH676], gi\|22872633... gi\|229095732, gi... - gi\|229095732\|ref\|ZP_04226711.1\| spore germination protein gerPA [Bacillus cereus Rock3-29], gi\|22868... gi\|228704858, gi... - gi\|229078436\|ref\|ZP_04210997.1\| spore germination protein gerPA [Bacillus cereus Rock4-2], gi\|228704... gi\|228674736, gi... - gi\|229108706\|ref\|ZP_04238316.1\| spore germination protein gerPA [Bacillus cereus Rock1-15], gi\|22867... gi\|228681624, gi... - gi\|229101831\|ref\|ZP_04232546.1\| spore germination protein gerPA [Bacillus cereus Rock3-28], gi\|22868... gi\|228656946, gi... - gi\|229126557\|ref\|ZP_04255571.1\| spore germination protein gerPA [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|229114682, gi... - gi\|229114682\|ref\|ZP_04244096.1\| spore germination protein gerPA [Bacillus cereus Rock1-3], gi\|228668... gi\|229149451, gi... - gi\|229149451\|ref\|ZP_04277687.1\| spore germination protein gerPA [Bacillus cereus m1550], gi\|22863409... gi\|229143854, gi... - gi\|229143854\|ref\|ZP_04272273.1\| spore germination protein gerPA [Bacillus cereus BDRD-ST24], gi\|2286... gi\|228628764, gi... - gi\|229154816\|ref\|ZP_04282931.1\| spore germination protein gerPA [Bacillus cereus ATCC 4342], gi\|2286... gi\|30019300, gi\|... - gi\|30019300\|ref\|NP_830931.1\| spore germination protein PA [Bacillus cereus ATCC 14579], gi\|29894843\|... gi\|42736245, gi\|... - gi\|42780326\|ref\|NP_977573.1\| spore germination protein GerPA [Bacillus cereus ATCC 10987], gi\|427362... gi\|228951613, gi... - gi\|228951613\|ref\|ZP_04113717.1\| spore germination protein gerPA [Bacillus thuringiensis serovar kurs... gi\|228821312, gi... - gi\|228938366\|ref\|ZP_04100977.1\| spore germination protein gerPA [Bacillus thuringiensis serovar berl...	102.0	[0..1]	[73..1]
gi\|52144183, gi\|... - gi\|52144183\|ref\|YP_082647.1\| spore germination protein PA [Bacillus cereus E33L], gi\|51977652\|gb\|AAU...	102.0	[0..1]	[73..1]
gi\|163861240, gi... - gi\|89205682\|ref\|ZP_01184250.1\| spore germination protein GerPA [Bacillus weihenstephanensis KBAB4], ... gi\|229010538, gi... - gi\|229010538\|ref\|ZP_04167740.1\| spore germination protein gerPA [Bacillus mycoides DSM 2048], gi\|228... gi\|229022707, gi... - gi\|229022707\|ref\|ZP_04179231.1\| spore germination protein gerPA [Bacillus cereus AH1272], gi\|2287385... gi\|228744765, gi... - gi\|229016498\|ref\|ZP_04173439.1\| spore germination protein gerPA [Bacillus cereus AH1273], gi\|2287447... gi\|229166083, gi... - gi\|229166083\|ref\|ZP_04293845.1\| spore germination protein gerPA [Bacillus cereus AH621], gi\|22861739... gi\|228651439, gi... - gi\|229132039\|ref\|ZP_04260902.1\| spore germination protein gerPA [Bacillus cereus BDRD-ST196], gi\|228...	99.0	[0..1]	[72..1]
gi\|89201755, gi\|... - gi\|89201755\|ref\|ZP_01180491.1\| spore germination protein PA [Bacillus cereus subsp. cytotoxis NVH 39...	96.0	[0..1]	[72..1]
gi\|221313234 - gi\|221313234\|ref\|ZP_03595039.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. NC... GERPA_BACSU - Probable spore germination protein GerPA OS=Bacillus subtilis (strain 168) GN=gerPA PE=1 SV=1 gi\|221322432 - gi\|221322432\|ref\|ZP_03603726.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. SM... gi\|221318157 - gi\|221318157\|ref\|ZP_03599451.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. JH... GEPA_BACSU, GERP... - Probable spore germination protein gerPA OS=Bacillus subtilis GN=gerPA PE=1 SV=1, (O06721) Probable ...	95.0	[0..1]	[72..1]
gi\|42783997, gi\|... - gi\|42783997\|ref\|NP_981244.1\| spore germination protein GerPF-like protein [Bacillus cereus ATCC 1098...	90.0	[0..1]	[69..7]

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Predicted Domain #1

Region A:
Residues: [1-73]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAMVGHIRI VNIGSSGIFH IGDVFAIRPI SYSRAFAGAG SFNVGDNVSV YNYQSATTVN  60
   61 DSDVVDQAII GST

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.791	b.40.14	Description not found.
View	Download	0.730	b.114.1	N-utilization substance G protein NusG, insert domain
View	Download	0.730	b.114.1	N-utilization substance G protein NusG, insert domain
View	Download	0.528	b.40.14	Description not found.
View	Download	0.512	b.40.2	Bacterial enterotoxins
View	Download	0.512	b.40.2	Bacterial enterotoxins
View	Download	0.495	b.40.4	Nucleic acid-binding proteins
View	Download	0.495	b.40.4	Nucleic acid-binding proteins
View	Download	0.372	b.40.4	Nucleic acid-binding proteins
View	Download	0.306	b.40.4	Nucleic acid-binding proteins
View	Download	0.241	b.40.4	Nucleic acid-binding proteins
View	Download	0.240	a.4.1	Homeodomain-like
View	Download	0.220	b.40.4	Nucleic acid-binding proteins
View	Download	0.214	b.71.1	Glycosyl hydrolase domain
View	Download	0.213	c.47.1	Thioredoxin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits