YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38492828
Organism:	Homo sapiens
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38492828.

Description	E-value	Query Range	Subject Range
gi\|47228273 - gi\|47228273\|emb\|CAG07668.1\| unnamed protein product [Tetraodon nigroviridis]	173.0	[0..1]	[129..219]
gi\|58891004 - gi\|58891004\|gb\|AAW83043.1\| collagen type X alpha 1 [Canis familiaris]	172.0	[0..2]	[128..493]
gi\|109501779 - gi\|109501779\|ref\|XP_344415.3\| PREDICTED: similar to adipocyte complement related protein of 30 kDa [...	171.0	[0..2]	[128..216]
COLE_LEPMA - Inner ear-specific collagen OS=Lepomis macrochirus PE=2 SV=1	171.0	[0..1]	[129..277]
gi\|68442829 - gi\|68442829\|ref\|XP_701165.1\| PREDICTED: similar to otolin-1 [Danio rerio]	170.0	[0..1]	[129..350]
C1QTNF9 - C1q and tumor necrosis factor related protein 9	169.0	[0..2]	[128..200]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFQSVFTVTR QTHQPPAPNS LIRFNAVLTN PQGDYDTSTG KFTCKVPGLY YFVYHASHTA  60
   61 NLCVLLYRSG VKVVTFCGHT SKTNQVNSGG VLLRLQVGEE VWLAVNDYYD MVGIQGSDSV 120
  121 FSGFLLFPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1pk6C
Description:	Globular Head of the Complement System Protein C1q
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits