YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|38492826
Organism:	Homo sapiens
Length:	133 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|38492826.

Description	E-value	Query Range	Subject Range
C1QA_RAT - Complement C1q subcomponent subunit A OS=Rattus norvegicus GN=C1qa PE=1 SV=2	172.0	[0..1]	[133..112]
gi\|57043319 - gi\|57043319\|ref\|XP_535367.1\| PREDICTED: similar to Complement C1q subcomponent, A chain precursor [C...	169.0	[0..1]	[133..112]
gi\|61368776, gi\|... - gi\|61368781\|gb\|AAX43236.1\| complement component 1 q subcomponent alpha polypeptide [synthetic constr...	169.0	[0..1]	[133..112]
gi\|254071643, gi... - gi\|254071643\|gb\|ACT64581.1\| complement component 1, q subcomponent, A chain protein [synthetic const... C1QA - complement component 1, q subcomponent, A chain	169.0	[0..1]	[133..112]
gi\|114554611 - gi\|114554611\|ref\|XP_001166821.1\| PREDICTED: complement component 1, q subcomponent, A chain [Pan tro...	169.0	[0..1]	[133..112]
C1QA_PIG - Complement C1q subcomponent subunit A OS=Sus scrofa GN=C1QA PE=2 SV=1	168.0	[0..1]	[133..114]
gi\|76681062 - gi\|76681062\|ref\|XP_595145.2\| PREDICTED: similar to Cerebellin 2 precursor (Cerebellin-like protein) ...	166.0	[0..2]	[132..296]
gi\|109104462 - gi\|109104462\|ref\|XP_001086320.1\| PREDICTED: similar to Cerebellin-2 precursor (Cerebellin-like prote...	166.0	[0..2]	[132..635]
gi\|47229556 - gi\|47229556\|emb\|CAG06752.1\| unnamed protein product [Tetraodon nigroviridis]	164.0	[0..2]	[132..257]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPRPAFSAIR RNPPMGGNVV IFDTVITNQE EPYQNHSGRF VCTVPGYYYF TFQVLSQWEI  60
   61 CLSIVSSSRG QVRRSLGFCD TTNKGLFQVV SGGMVLQLQQ GDQVWVEKDP KKGHIYQGSE 120
  121 ADSVFSGFLI FPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.221849
Match:	1pk6A
Description:	Globular Head of the Complement System Protein C1q
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits