YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39654307, gi\|...
Organism:	Escherichia coli
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39654307, gi|....

Description	E-value	Query Range	Subject Range
gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7], gi\|13364312\|db... gi\|209747424, gi... - pir\|\|D86080 hypothetical protein yiiM [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12518809, gi\|... - gi\|15804500\|ref\|NP_290540.1\| hypothetical protein Z5455 [Escherichia coli O157:H7 EDL933], gi\|125188... gi\|13364312, gi\|... - gi\|15834090\|ref\|NP_312863.1\| hypothetical protein ECs4836 [Escherichia coli O157:H7 str. Sakai], gi\|...	267.0	[0..3]	[236..1]
gi\|17428171 - gi\|17428171\|emb\|CAD14859.1\| conserved hypothetical protein [Ralstonia solanacearum GMI1000] gi\|17545876 - gi\|17545876\|ref\|NP_519278.1\| hypothetical protein RSc1157 [Ralstonia solanacearum GMI1000]	265.0	[0..11]	[237..4]
gi\|16131750, gi\|... - gb\|AAC76892.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi... gi\|82546260, gi\|... - gi\|82546260\|ref\|YP_410207.1\| hypothetical protein SBO_3928 [Shigella boydii Sb227], gi\|81247671\|gb\|A... gi\|305014\|gb\|AAB... - ORF_o234 [Escherichia coli] gi\|305014, gi\|541118 - pir\|\|S40854 hypothetical 26.6K protein (kdgt-cpxa intergenic region) - Escherichia coli (strain K-12... gi\|226838563, gi... - gi\|254039127\|ref\|ZP_04873177.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683856...	265.0	[0..3]	[236..1]
gi\|227885349, gi... - gi\|227885349\|ref\|ZP_04003154.1\| MOSC domain protein [Escherichia coli 83972], gi\|227837725\|gb\|EEJ481... gi\|91075025, gi\|... - gi\|91213451\|ref\|YP_543437.1\| hypothetical protein YiiM [Escherichia coli UTI89], gi\|91075025\|gb\|ABE0... gi\|26250676, gi\|... - gi\|26250676\|ref\|NP_756716.1\| Hypothetical protein yiiM [Escherichia coli CFT073], gi\|26111107\|gb\|AAN...	264.0	[0..3]	[236..1]
gi\|24054490, gi\|... - ref\|NP_709716.1\| hypothetical protein SF3989 [Shigella flexneri 2a str. 301], gb\|AAN45423.1\| orf, c... gi\|74314411, gi\|... - gi\|74314411\|ref\|YP_312830.1\| hypothetical protein SSON_4080 [Shigella sonnei Ss046], gi\|73857888\|gb\|...	263.0	[0..3]	[236..1]
gi\|238798343, gi... - gi\|77960727\|ref\|ZP_00824586.1\| COG2258: Uncharacterized protein conserved in bacteria [Yersinia moll...	263.0	[0..18]	[237..5]
gi\|75176704 - gi\|75176704\|ref\|ZP_00696832.1\| COG2258: Uncharacterized protein conserved in bacteria [Shigella boyd...	262.0	[0..3]	[236..1]
gi\|81243070, gi\|... - gi\|82778922\|ref\|YP_405271.1\| hypothetical protein SDY_3836 [Shigella dysenteriae Sd197], gi\|81243070...	262.0	[0..3]	[236..1]
gi\|16762378 - gi\|16762378\|ref\|NP_457995.1\| hypothetical protein STY3815 [Salmonella enterica subsp. enterica serov... gi\|16504682, gi\|... - gi\|25303359\|pir\|\|AF0943 conserved hypothetical protein STY3815 [imported] - Salmonella enterica subs... gi\|29143866, gi\|... - gi\|29143866\|ref\|NP_807208.1\| hypothetical protein t3563 [Salmonella enterica subsp. enterica serovar...	262.0	[0..2]	[237..11]
gi\|148371833, gi... - gi\|148560576\|ref\|YP_001259608.1\| MOSC domain-containing protein [Brucella ovis ATCC 25840], gi\|14837... gi\|161336498, gi... - gi\|161619687\|ref\|YP_001593574.1\| hypothetical protein BCAN_A1800 [Brucella canis ATCC 23365], gi\|161... gi\|163845339, gi... - gi\|163845339\|ref\|YP_001622994.1\| hypothetical protein BSUIS_B1238 [Brucella suis ATCC 23445], gi\|163... gi\|225616170, gi... - gi\|225628324\|ref\|ZP_03786358.1\| MOSC domain-containing protein [Brucella ceti str. Cudo], gi\|2256161... gi\|23348624, gi\|... - gi\|23502619\|ref\|NP_698746.1\| MOSC domain-containing protein [Brucella suis 1330], gi\|23348624\|gb\|AAN... gi\|254708770 - gi\|254708770\|ref\|ZP_05170581.1\| hypothetical protein BpinB_00636 [Brucella pinnipedialis B2/94] gi\|254708376 - gi\|254708376\|ref\|ZP_05170204.1\| hypothetical protein BpinM_15845 [Brucella pinnipedialis M163/99/10] gi\|254703535 - gi\|254703535\|ref\|ZP_05165363.1\| hypothetical protein Bsuib36_06349 [Brucella suis bv. 3 str. 686] gi\|254700416 - gi\|254700416\|ref\|ZP_05162244.1\| hypothetical protein Bsuib55_06109 [Brucella suis bv. 5 str. 513]	261.0	[0..16]	[240..5]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLGKFLVER EQMRYPVDVY TGKIQAYPEG KPSAIAKIQV DGELMLTELG LEGDEQAEKK  60
   61 VHGGPDRALC HYPREHYLYW AREFPEQAEL FVAPAFGENL STDGLTESNV YMGDIFRWGE 120
  121 ALIQVSQPRS PCYKLNYHFD ISDIAQLMQN TGKVGWLYSV IAPGKVSADA PLELVSRVSD 180
  181 VTVQEAAAIA WHMPFDDDQY HRLLSAAGLS KSWTRTMQKR RLSGKIEDFS RRLWGKEGGS 240
  241 HHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1o65A
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.442129199706088	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: