YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|217318446, gi...
Organism:	Escherichia coli O157:H7 str. TW14588
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|217318446, gi....

Description	E-value	Query Range	Subject Range
gi\|75195241, gi\|... - gi\|75195241\|ref\|ZP_00705311.1\| COG2353: Uncharacterized conserved protein [Escherichia coli HS], gi\|... gi\|124498773, gi... - gi\|124531154\|ref\|ZP_01701509.1\| YceI family protein [Escherichia coli B], gi\|124498773\|gb\|EAY46276.1... gi\|170020548, gi... - gi\|170020548\|ref\|YP_001725502.1\| hypothetical protein EcolC_2544 [Escherichia coli ATCC 8739], gi\|16...	235.0	[0..1]	[191..1]
gi\|157159017, gi... - gi\|75190115\|ref\|ZP_00703382.1\| COG2353: Uncharacterized conserved protein [Escherichia coli E24377A]...	235.0	[0..1]	[191..1]
gi\|227836791, gi... - gi\|227886587\|ref\|ZP_04004392.1\| YceI protein [Escherichia coli 83972], gi\|227836791\|gb\|EEJ47257.1\| Y... YCEI_ECOL6 - Protein YceI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yceI PE=3 SV=1 YCEI_ECOL6 - Protein yceI OS=Escherichia coli O6 GN=yceI PE=3 SV=1	235.0	[0..1]	[191..1]
gi\|110342825, gi... - gi\|110641233\|ref\|YP_668963.1\| hypothetical protein ECP_1049 [Escherichia coli 536], gi\|110342825\|gb\|... gi\|190907332, gi... - gi\|75240653\|ref\|ZP_00724570.1\| COG2353: Uncharacterized conserved protein [Escherichia coli F11], gi...	235.0	[0..1]	[191..1]
gi\|110805075, gi... - gi\|110805075\|ref\|YP_688595.1\| hypothetical protein SFV_1079 [Shigella flexneri 5 str. 8401], gi\|1106... YCEI_SHIFL - Protein YceI OS=Shigella flexneri GN=yceI PE=3 SV=1 gi\|24051352, gi\|... - gi\|24112468\|ref\|NP_706978.1\| hypothetical protein SF1063 [Shigella flexneri 2a str. 301], gi\|2405135... gi\|30062594, gi\|... - gi\|30062594\|ref\|NP_836765.1\| hypothetical protein S1140 [Shigella flexneri 2a str. 2457T], gi\|300408...	235.0	[0..1]	[191..1]
gi\|213647662 - gi\|213647662\|ref\|ZP_03377715.1\| hypothetical protein SentesTy_10467 [Salmonella enterica subsp. ente... gi\|213850364 - gi\|213850364\|ref\|ZP_03381262.1\| hypothetical protein SentesT_01830 [Salmonella enterica subsp. enter... gi\|214002367 - gi\|214002367\|ref\|ZP_03413102.1\| hypothetical protein Salmonellentericaenterica_19086 [Salmonella ent... YCEI_SALPC - Protein YceI OS=Salmonella paratyphi C (strain RKS4594) GN=yceI PE=3 SV=1 YCEI_SALEP - Protein YceI OS=Salmonella enteritidis PT4 (strain P125109) GN=yceI PE=3 SV=1 gi\|213053061 - gi\|213053061\|ref\|ZP_03345939.1\| hypothetical protein Salmoneentericaenterica_09160 [Salmonella enter... gi\|213427723 - gi\|213427723\|ref\|ZP_03360473.1\| hypothetical protein SentesTyphi_20325 [Salmonella enterica subsp. e... gi\|213579675 - gi\|213579675\|ref\|ZP_03361501.1\| hypothetical protein SentesTyph_00080 [Salmonella enterica subsp. en... YCEI_SALDC - Protein YceI OS=Salmonella dublin (strain CT_02021853) GN=yceI PE=3 SV=1 gi\|200389755, gi... - gi\|200389755\|ref\|ZP_03216366.1\| protein YceI [Salmonella enterica subsp. enterica serovar Virchow st... YCEI_SALTY - Protein yceI OS=Salmonella typhimurium GN=yceI PE=3 SV=1 gi\|204320175, gi... - gi\|204930716\|ref\|ZP_03221589.1\| protein YceI [Salmonella enterica subsp. enterica serovar Javiana st... gi\|238911023 - gi\|238911023\|ref\|ZP_04654860.1\| hypothetical protein SentesTe_07787 [Salmonella enterica subsp. ente... YCEI_SALTI - Protein yceI OS=Salmonella typhi GN=yceI PE=3 SV=1 YCEI_SALG2 - Protein YceI OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=yceI PE=3 SV=1 gi\|194468502, gi... - gi\|194468502\|ref\|ZP_03074486.1\| protein YceI [Salmonella enterica subsp. enterica serovar Kentucky s... YCEI_SALSV - Protein YceI OS=Salmonella schwarzengrund (strain CVM19633) GN=yceI PE=3 SV=1 gi\|197263556, gi... - gi\|197263556\|ref\|ZP_03163630.1\| protein YceI [Salmonella enterica subsp. enterica serovar Saintpaul ... YCEI_SALPK - Protein YceI OS=Salmonella paratyphi A (strain AKU_12601) GN=yceI PE=3 SV=1 YCEI_SALCH - Protein yceI OS=Salmonella choleraesuis GN=yceI PE=3 SV=1 lcl\|NC_016856.1_... - [gene=yceI] [protein=hypothetical protein] [protein_id=YP_005236909.1] [location=complement(1203022.... YCEI_SALPA - Protein yceI OS=Salmonella paratyphi A GN=yceI PE=3 SV=1 YCEI_SALCH - Protein YceI OS=Salmonella choleraesuis (strain SC-B67) GN=yceI PE=3 SV=1 YCEI_SALTY - Protein yceI OS=Salmonella typhimurium GN=yceI PE=3 SV=1 YCEI_SALCH - Protein yceI OS=Salmonella choleraesuis GN=yceI PE=3 SV=1 YCEI_SALAR - Protein YceI OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=yceI PE=3 SV=1 YCEI_SALPB - Protein yceI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yceI PE=3 SV=1 YCEI_SALPA - Protein YceI OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yceI PE=3 SV=1 gi\|168264055, gi... - gi\|205347377\|gb\|EDZ34008.1\| protein YceI [Salmonella enterica subsp. enterica serovar Hadar str. RI_... gi\|168467103, gi... - gi\|195630414\|gb\|EDX49040.1\| protein YceI [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205340999, gi... - gi\|205340999\|gb\|EDZ27763.1\| protein YceI [Salmonella enterica subsp. enterica serovar Weltevreden st... YCEI_SALHS - Protein YceI OS=Salmonella heidelberg (strain SL476) GN=yceI PE=3 SV=1 YCEI_SALTY - Protein YceI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yceI PE=3 SV=1 gi\|167994017, gi... - gi\|205328019\|gb\|EDZ14783.1\| protein YceI [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|29142195, gi\|... - gi\|29142195\|ref\|NP_805537.1\| hypothetical protein t1763 [Salmonella enterica subsp. enterica serovar... gi\|205331916, gi... - gi\|205331916\|gb\|EDZ18680.1\| protein YceI [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|197289808, gi... - gi\|197289808\|gb\|EDY29169.1\| protein YceI [Salmonella enterica subsp. enterica serovar Schwarzengrund... YCEI_SALTI - Protein YceI OS=Salmonella typhi GN=yceI PE=3 SV=1 gi\|168244751, gi... - gi\|205336440\|gb\|EDZ23204.1\| protein YceI [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|16760034 - gi\|16760034\|ref\|NP_455651.1\| hypothetical protein STY1194 [Salmonella enterica subsp. enterica serov... gi\|205322451, gi... - gi\|205322451\|gb\|EDZ10290.1\| protein YceI [Salmonella enterica subsp. enterica serovar Saintpaul str.... YCEI_SALPB - Protein YceI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=yceI PE=3 SV=1	234.0	[0..1]	[191..1]
gi\|194419254, gi... - gi\|83570496\|ref\|ZP_00921940.1\| COG2353: Uncharacterized conserved protein [Shigella dysenteriae 1012...	234.0	[0..1]	[191..1]
gi\|238728612, gi... - gi\|77979112\|ref\|ZP_00834533.1\| COG2353: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	230.0	[0..2]	[191..3]
YCEI_SHIDS - Protein YceI OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yceI PE=3 SV=1	228.0	[0..1]	[182..1]
gi\|77957990 - gi\|77957990\|ref\|ZP_00822032.1\| COG2353: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	228.0	[0..2]	[191..5]

Back

Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSLLGLTF ASLMFSAGSA VAADYKIDKE GQHAFVNFRI QHLGYSWLYG TFKDFDGTFT  60
   61 FDEKNPAADK VNVTINTTSV DTNHAERDKH LRSADFLNTA KYPQATFTST SVKKDGDELD 120
  121 ITGDLTLNGV TKPVTLEAKL IGQGDDPWGG KRAGFEAEGK IKLKDFNIKT DLGPASQEVD 180
  181 LIISVEGVQQ K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1y0gA
Description:	CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits