YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|169889371, gi...
Organism:	Escherichia coli str. K-12 substr. DH10B
Length:	382 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|169889371, gi....

Description	E-value	Query Range	Subject Range
gi\|205331965, gi... - gi\|205331965\|gb\|EDZ18729.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|168462551, gi... - gi\|195634185\|gb\|EDX52537.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|205342676, gi... - gi\|205342676\|gb\|EDZ29440.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|194404199, gi... - gi\|194445536\|ref\|YP_002041180.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|161613526, gi... - gi\|161613526\|ref\|YP_001587491.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|205327877, gi... - gi\|205327877\|gb\|EDZ14641.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... FLHB_SALTY - Flagellar biosynthetic protein FlhB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... lcl\|NC_016856.1_... - [gene=flhB] [protein=flagellar biosynthesis protein FlhB] [protein_id=YP_005237881.1] [location=comp... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|194472731, gi... - gi\|194472731\|ref\|ZP_03078715.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ente... gi\|197251527, gi... - gi\|197251527\|ref\|YP_002146107.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... gi\|238912509 - gi\|238912509\|ref\|ZP_04656346.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente...	497.0	[0..1]	[381..1]
gi\|213999608 - gi\|213999608\|ref\|ZP_03410343.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16760863 - gi\|16760863\|ref\|NP_456480.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|213583527 - gi\|213583527\|ref\|ZP_03365353.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|213426385 - gi\|213426385\|ref\|ZP_03359135.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16503160, gi\|... - gi\|25322221\|pir\|\|AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella enterica subsp. ... gi\|213163285 - gi\|213163285\|ref\|ZP_03348995.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|29141445, gi\|... - gi\|29141445\|ref\|NP_804787.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	496.0	[0..1]	[381..1]
gi\|197093569, gi... - gi\|197362092\|ref\|YP_002141729.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|56127423, gi\|... - gi\|56413166\|ref\|YP_150241.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	496.0	[0..1]	[381..1]
gi\|62180491, gi\|... - gi\|62180491\|ref\|YP_216908.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|224468109, gi... - gi\|224583582\|ref\|YP_002637380.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica...	496.0	[0..1]	[381..1]
gi\|26108550, gi\|... - gi\|26248146\|ref\|NP_754186.1\| flagellar biosynthesis protein FlhB [Escherichia coli CFT073], gi\|26108... gi\|227837266, gi... - gi\|227885693\|ref\|ZP_04003498.1\| flagellar biosynthesis protein FlhB [Escherichia coli 83972], gi\|227... gi\|226900592, gi... - gi\|237705835\|ref\|ZP_04536316.1\| flagellar biosynthesis protein FlhB [Escherichia sp. 3_2_53FAA], gi\|... gi\|91072678, gi\|... - gi\|91211104\|ref\|YP_541090.1\| flagellar biosynthesis protein FlhB [Escherichia coli UTI89], gi\|910726... gi\|110343589, gi... - gi\|110641997\|ref\|YP_669727.1\| flagellar biosynthesis protein FlhB [Escherichia coli 536], gi\|1103435... gi\|191172970, gi... - gi\|75239700\|ref\|ZP_00723663.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|117624031, gi... - gi\|117624031\|ref\|YP_852944.1\| flagellar biosynthesis protein FlhB [Escherichia coli APEC O1], gi\|115... gi\|218365513, gi... - gi\|218558744\|ref\|YP_002391657.1\| flagellar biosynthesis protein FlhB [Escherichia coli S88], gi\|2183...	493.0	[0..1]	[382..1]
gi\|25322210 - pir\|\|B85801 hypothetical protein flhB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15802292, gi\|... - gi\|15802292\|ref\|NP_288317.1\| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 EDL933], ...	492.0	[0..1]	[382..1]
gi\|190901893, gi... - gi\|75228739\|ref\|ZP_00715352.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ...	492.0	[0..1]	[382..1]
gi\|15831844, gi\|... - gi\|15831844\|ref\|NP_310617.1\| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. Saka... gi\|208810589, gi... - gi\|208810589\|ref\|ZP_03252465.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. E... gi\|195939584 - gi\|195939584\|ref\|ZP_03084966.1\| flagellar biosynthesis protein FlhB [Escherichia coli O157:H7 str. E... gi\|189376036, gi... - gi\|189376036\|gb\|EDU94452.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC508... gi\|168789748, gi... - gi\|189370698\|gb\|EDU89114.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC869... gi\|15831844, gi\|... - gi\|15831844\|ref\|NP_310617.1\| flagellar biosynthesis protein [Escherichia coli O157:H7], gi\|13362058\|... gi\|217318313, gi... - gi\|217328966\|ref\|ZP_03445047.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. T... gi\|209400586, gi... - gi\|209400586\|ref\|YP_002270964.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. ... gi\|208741872, gi... - gi\|208821749\|ref\|ZP_03262069.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. E... gi\|254793504, gi... - gi\|254793504\|ref\|YP_003078341.1\| predicted flagellar export pore protein [Escherichia coli O157:H7 s... gi\|209767306, gi... - pir\|\|F90952 flagellar biosynthesis protein FlhB [imported] - Escherichia coli (strain O157:H7, subst... gi\|208731099, gi... - gi\|208816756\|ref\|ZP_03257876.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. E... gi\|168757917, gi... - gi\|189355171\|gb\|EDU73590.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC440... gi\|168747910, gi... - gi\|188017418\|gb\|EDU55540.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC411... gi\|168783183, gi... - gi\|188999430\|gb\|EDU68416.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC407... gi\|187768084, gi... - gi\|187768084\|gb\|EDU31928.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC419... gi\|189360277, gi... - gi\|189360277\|gb\|EDU78696.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC448... gi\|189367382, gi... - gi\|189367382\|gb\|EDU85798.1\| flagellar biosynthetic protein FlhB [Escherichia coli O157:H7 str. EC450...	491.0	[0..1]	[382..1]
gi\|75235316, gi\|... - gi\|75235316\|ref\|ZP_00719542.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|157067031, gi... - gi\|75195944\|ref\|ZP_00706014.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|194422032, gi... - gi\|83585520\|ref\|ZP_00924164.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ... gi\|253978035, gi... - gi\|254288728\|ref\|YP_003054476.1\| flagellar biosynthesis protein B [Escherichia coli BL21(DE3)], gi\|2... gi\|251785328, gi... - gi\|251785328\|ref\|YP_002999632.1\| hypothetical protein B21_01840 [Escherichia coli BL21], gi\|24237760... gi\|124498825, gi... - gi\|124531086\|ref\|ZP_01701471.1\| flagellar biosynthetic protein FlhB [Escherichia coli B], gi\|1244988... gi\|253973841, gi... - gi\|254161940\|ref\|YP_003045048.1\| flagellar biosynthesis protein B [Escherichia coli B str. REL606], ... gi\|218352178, gi... - gi\|218695446\|ref\|YP_002403113.1\| flagellar biosynthesis protein FlhB [Escherichia coli 55989], gi\|21... gi\|170019775, gi... - gi\|170019775\|ref\|YP_001724729.1\| flagellar biosynthesis protein FlhB [Escherichia coli ATCC 8739], g... gi\|188494102, gi... - gi\|75513026\|ref\|ZP_00735488.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Escherichia ...	490.0	[0..1]	[382..1]
gi\|3169254 - gi\|3169254\|gb\|AAC17834.1\| flagellar protein FlhB [Escherichia coli]	490.0	[0..1]	[382..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDESDDKTE APTPHRLEKA REEGQIPRSR ELTSLLILLV GVSVIWFGGV SLARRLSGML  60
   61 SAGLHFDHSI INDPNLILGQ IILLIREAML ALLPLISGVV LVALISPVML GGLVFSGKSL 120
  121 QPKFSKLNPL PGIKRMFSAQ TGAELLKAIL KTILVGSVTG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [161-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FFLWHHWPQM MRLMAESPIT AMGNAMDLVG LCALLVVLGV IPMVGFDVFF QIFSHLKKLR  60
   61 MSRQDIRDEF KQSEGDPHVK GRIRQMQRAA ARRRMMADV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [260-382]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKADVIVNNP THYSVALQYD ENKMSAPKVV AKGAGLVALR IREIGAENNV PTLEAPPLAR  60
   61 ALYRHAEIGQ QIPGQLYAAV AEVLAWVWQL KRWRLAGGQR PVQPTHLPVP EALDFINEKP 120
  121 THE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.866	0.072	protein secretion	d.189.1	PX domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits