YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|177655398, gi...
Organism:	Bacillus anthracis str. A0174
Length:	321 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|177655398, gi....

Description	E-value	Query Range	Subject Range
gi\|30023135, gi\|... - gi\|30023135\|ref\|NP_834766.1\| hypothetical protein BC5098 [Bacillus cereus ATCC 14579], gi\|29898695\|g... gi\|228653040, gi... - gi\|229130341\|ref\|ZP_04259299.1\| hypothetical protein bcere0015_47760 [Bacillus cereus BDRD-Cer4], gi...	0.0	[1..321]	[1..321]
gi\|49480776, gi\|... - gi\|49480776\|ref\|YP_039100.1\| lipoprotein [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|4...	0.0	[1..321]	[1..321]
gi\|228903589, gi... - gi\|228903589\|ref\|ZP_04067710.1\| hypothetical protein bthur0014_47470 [Bacillus thuringiensis IBL 422... gi\|228969472, gi... - gi\|228969472\|ref\|ZP_04130285.1\| hypothetical protein bthur0004_61490 [Bacillus thuringiensis serovar... gi\|75760065, gi\|... - gi\|75760065\|ref\|ZP_00740129.1\| Hypothetical protein RBTH_06214 [Bacillus thuringiensis serovar israe...	0.0	[1..321]	[1..321]
gi\|52140449, gi\|... - gi\|52140449\|ref\|YP_086380.1\| lipoprotein [Bacillus cereus E33L], gi\|51973918\|gb\|AAU15468.1\| conserve...	0.0	[1..321]	[1..321]
gi\|227177127, gi... - gi\|227553745\|ref\|ZP_03983794.1\| S-layer protein [Enterococcus faecalis HH22], gi\|227177127\|gb\|EEI580... gi\|29375013, gi\|... - gi\|29375013\|ref\|NP_814166.1\| hypothetical protein EF0375 [Enterococcus faecalis V583], gi\|29342472\|g... gi\|238857975, gi... - gi\|238857975\|ref\|ZP_04648201.1\| S-layer protein [Enterococcus faecalis TUSoD Ef11], gi\|238829326\|gb\|...	0.0	[4..321]	[2..321]
gi\|65320906 - gi\|65320906\|ref\|ZP_00393865.1\| hypothetical protein Bant_01004347 [Bacillus anthracis str. A2012]	0.0	[39..320]	[229..509]
gi\|49180356, gi\|... - gi\|49186429\|ref\|YP_029681.1\| S-layer protein, putative [Bacillus anthracis str. Sterne], gi\|49180356... gi\|47551901, gi\|... - gi\|47778196\|ref\|YP_020328.2\| s-layer protein, putative [Bacillus anthracis str. 'Ames Ancestor'], gi... gi\|30263581, gi\|... - gi\|30263581\|ref\|NP_845958.1\| S-layer protein, putative [Bacillus anthracis str. Ames], gi\|30258216\|g...	0.0	[39..320]	[229..509]
gi\|47567919, gi\|... - gi\|47567919\|ref\|ZP_00238626.1\| lipoprotein, putative [Bacillus cereus G9241], gi\|47555397\|gb\|EAL1374...	0.0	[39..320]	[211..491]

Back

Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKTKALSS ILLGFTLALT GCAGTKAEEN HNKPKQEQAA KETKKENKLT KGQKMANILS  60
   61 DTNWQGTRVY DKDKNDVTKE NANFIGLAKY DAKSGRYEFF DAKTGASRGD KGTFFITNDG 120
  121 KKRILISESM KYQAVVDMTK LNKNVFTYKR MGKDANGNDV EVFVEHVPYK EKELSFTDPD 180
  181 KELNTTTGDI VKNIDGDKIL GGTLWHGTKV LDEAGNDVTQ FNSNFISLAK FDDKSNKYEF 240
  241 FNSETGQSRG DYGYFDVLHE NKIRAHVSIG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [271-321]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNKYGAALEL TELNKNKFTY KRTGKDQAGN DITIFVEHEP YTGDMKPQFS F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits