YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810362, gi\|...
Organism:	Homo sapiens
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810362, gi|....

Description	E-value	Query Range	Subject Range
gi\|3170456 - gi\|3170456\|gb\|AAC18085.1\| recombinant uncleavable reversed caspase-3 [synthetic construct]	155.0	[0..3]	[103..9]
gi\|45382613, gi\|... - gi\|45382613\|ref\|NP_990056.1\| caspase 3 [Gallus gallus], gi\|3450875\|gb\|AAC32602.1\| caspase-3 [Gallus ...	154.0	[0..1]	[99..184]
gi\|109090595 - gi\|109090595\|ref\|XP_001090598.1\| PREDICTED: similar to caspase 7 isoform delta isoform 3 [Macaca mul...	152.0	[0..4]	[100..239]
gi\|123981280, gi... - gi\|123996111\|gb\|ABM85657.1\| caspase 3, apoptosis-related cysteine peptidase [synthetic construct], g... CASP3 - caspase 3, apoptosis-related cysteine peptidase	151.0	[0..3]	[100..179]
CASP3_PANTR - Caspase-3 OS=Pan troglodytes GN=CASP3 PE=2 SV=1	151.0	[0..3]	[100..179]
CASP3_SAIBB - Caspase-3 OS=Saimiri boliviensis boliviensis GN=CASP3 PE=2 SV=1 gi\|56122232 - gi\|56122232\|gb\|AAV74267.1\| caspase 3 [Saimiri boliviensis]	151.0	[0..3]	[99..179]
gi\|83816924, gi\|... - gi\|83816924\|ref\|NP_001033059.1\| caspase-3-like protein 1 [Monodelphis domestica], gi\|83026040\|gb\|ABB...	150.0	[0..3]	[100..178]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGKEKLPKMR LPTRSDMICG YACLKGTAAM RNTKRGSWYI EALAQVFSER ACDMHVADML  60
   61 VKVNALIKDR EGYAPGTEFH RCKEMSEYCS TLCRHLYLFP GHPPT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1pyoB
Description:	Crystal Structure of Human Caspase-2 in Complex with Acetyl-Leu-Asp-Glu-Ser-Asp-cho
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits