YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218769239, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	171 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218769239, gi....

Description	E-value	Query Range	Subject Range
gi\|49081540 - gi\|49081540\|gb\|AAT50170.1\| PA0276 [synthetic construct]	7.0E-53	[1..171]	[1..171]
gi\|28850778, gi\|... - gi\|28867543\|ref\|NP_790162.1\| hypothetical protein PSPTO_0312 [Pseudomonas syringae pv. tomato str. D... tr\|Q88AS4\|Q88AS4... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0312 PE=4 SV=1	1.0E-52	[1..170]	[1..173]
gi\|32043447, gi\|... - gi\|32043447\|ref\|ZP_00140709.1\| COG4539: Predicted membrane protein [Pseudomonas aeruginosa UCBPP-PA1...	2.0E-52	[1..171]	[1..171]
gi\|66043512, gi\|... - gi\|66043512\|ref\|YP_233353.1\| hypothetical protein Psyr_0242 [Pseudomonas syringae pv. syringae B728a...	8.0E-52	[1..170]	[1..173]
gi\|71734241, gi\|... - gi\|71734241\|ref\|YP_272535.1\| hypothetical protein PSPPH_0230 [Pseudomonas syringae pv. phaseolicola ...	8.0E-52	[1..170]	[1..173]
gi\|94413721 - gi\|94413721\|ref\|ZP_01293598.1\| hypothetical protein PaerP_01004506 [Pseudomonas aeruginosa PA7]	1.0E-51	[1..171]	[1..171]
gi\|48729092, gi\|... - gi\|77456426\|ref\|YP_345931.1\| hypothetical protein Pfl01_0198 [Pseudomonas fluorescens Pf0-1], gi\|773...	5.0E-51	[1..170]	[1..173]
gi\|84362695 - gi\|84362695\|ref\|ZP_00987310.1\| COG4539: Predicted membrane protein [Burkholderia dolosa AUO158]	3.0E-48	[1..167]	[1..171]
gi\|105893666, gi... - gi\|67660748\|ref\|ZP_00458087.1\| Protein of unknown function DUF962 [Burkholderia cenocepacia AU 1054]... gi\|116690560, gi... - gi\|67668399\|ref\|ZP_00465560.1\| Protein of unknown function DUF962 [Burkholderia cenocepacia HI2424],...	4.0E-48	[1..167]	[1..171]
tr\|I7B481\|I7B481... - PRS2-like protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_0239 PE=4 SV=1 gi\|5091483 - gi\|5091483\|gb\|AAD39556.1\| PRS2-like protein [Pseudomonas putida]	7.0E-48	[1..170]	[1..173]

Back

Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVDHLAQ YAAYHRDRRN IFSHFIGIPM IVLSIAVLLA RPALGFGLSP ALLLALAAAL  60
   61 FYLRLDLRFG VAMTALLALT VWGAAQLAAG TTAAWLGWGV GLFVVGWIIQ FVGHYYEGRK 120
  121 PAFVDDLSGL IVGPLFVLAE LAFLLGLRGD VQREVEERAG PTCIREHKRA A

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	79.481486
Match:	PF06127.2
Description:	No description for PF06127.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits