YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|189354736, gi...
Organism:	Escherichia coli O157:H7 str. EC4401
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|189354736, gi....

Description	E-value	Query Range	Subject Range
gi\|188494400, gi... - gi\|75514017\|ref\|ZP_00736347.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	249.0	[0..1]	[181..1]
gi\|92110340 - gi\|92110340\|emb\|CAJ87608.1\| putative cobinamide kinase/cobinamide phosphate guanylyltransferase [Esc...	248.0	[0..1]	[181..1]
gi\|193062943, gi... - gi\|75259128\|ref\|ZP_00730476.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	248.0	[0..1]	[181..1]
gi\|74312526, gi\|... - gi\|74312526\|ref\|YP_310945.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	247.0	[0..1]	[181..1]
gi\|218369427, gi... - gi\|218699441\|ref\|YP_002407070.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|191170025, gi... - gi\|75242807\|ref\|ZP_00726513.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|26248331, gi\|... - gi\|26248331\|ref\|NP_754371.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|227885538, gi... - gi\|227885538\|ref\|ZP_04003343.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|226900775, gi... - gi\|237704409\|ref\|ZP_04534890.1\| cobalamin biosynthesis protein cobU [Escherichia sp. 3_2_53FAA], gi\|... gi\|91072818, gi\|... - gi\|91211244\|ref\|YP_541230.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|110343753, gi... - gi\|110642161\|ref\|YP_669891.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfe...	247.0	[0..1]	[181..1]
gi\|157156453, gi... - gi\|75186793\|ref\|ZP_00700060.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|169754593, gi... - gi\|170019665\|ref\|YP_001724619.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|170521642, gi... - gi\|170683924\|ref\|YP_001743201.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherich... gi\|192955065, gi... - gi\|75214804\|ref\|ZP_00713293.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|82777465, gi\|... - gi\|82777465\|ref\|YP_403814.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|209919468, gi... - gi\|209919468\|ref\|YP_002293552.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|218554568, gi... - gi\|218554568\|ref\|YP_002387481.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|124530707, gi... - gi\|124530707\|ref\|ZP_01701264.1\| Adenosylcobinamide kinase [Escherichia coli B], gi\|124499025\|gb\|EAY4...	247.0	[0..1]	[181..1]
gi\|194420282, gi... - gi\|83571281\|ref\|ZP_00922722.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	246.0	[0..1]	[181..1]
gi\|194413190, gi... - gi\|75210051\|ref\|ZP_00710234.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	246.0	[0..1]	[181..1]
gi\|190902241, gi... - gi\|75229132\|ref\|ZP_00715707.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	246.0	[0..1]	[181..1]
gi\|157161476, gi... - gi\|75196055\|ref\|ZP_00706125.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	246.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMILVTGGAR SGKSRHAEAL IGDSSQVLYI ATSQILDDEM AARIEHHRQG RPEHWRTVER  60
   61 WQHLDELIHA DINPNEVVLL ECVTTMVTNL LFDYGGDKDP DEWDYQAMEQ AINAEIQSLI 120
  121 AACQRCPAKV VLVTNEVGMG IVPESRLARH FRDIAGRVNQ QLAAAANEVW LVVSGIGVKI 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.0
Match:	1c9kA
Description:	Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
cob(I)yrinic acid a,c-diamide adenosyltransferase activity	0.0388346549390599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: