YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170024110, gi...
Organism:	Yersinia pseudotuberculosis YPIII
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170024110, gi....

Description	E-value	Query Range	Subject Range
gi\|77959187 - gi\|77959187\|ref\|ZP_00823209.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Yersi...	0.0	[1..365]	[1..365]
gi\|77961716 - gi\|77961716\|ref\|ZP_00825548.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Yersi...	0.0	[1..365]	[1..365]
gi\|238787145, gi... - gi\|77975305\|ref\|ZP_00830841.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Yersi...	0.0	[1..365]	[1..365]
gi\|238792289, gi... - gi\|77979560\|ref\|ZP_00834978.1\| COG1902: NADH:flavin oxidoreductases, Old Yellow Enzyme family [Yersi...	0.0	[1..365]	[1..365]
gi\|16502773, gi\|... - gi\|25325970\|pir\|\|AB0695 N-ethylmaleimide reductase (EC 1.-.-.-) [imported] - Salmonella enterica sub... gi\|213586463 - gi\|213586463\|ref\|ZP_03368289.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica sero... gi\|29137391, gi\|... - gi\|29141763\|ref\|NP_805105.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar... gi\|213426001 - gi\|213426001\|ref\|ZP_03358751.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica sero... gi\|213161994 - gi\|213161994\|ref\|ZP_03347704.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica sero... gi\|16760477 - gi\|16760477\|ref\|NP_456094.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar... gi\|214000293 - gi\|214000293\|ref\|ZP_03411028.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica sero... gi\|213855185 - gi\|213855185\|ref\|ZP_03383425.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica sero...	0.0	[1..365]	[1..365]
gi\|56127852, gi\|... - gi\|56413595\|ref\|YP_150670.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar... gi\|197093996, gi... - gi\|197362519\|ref\|YP_002142156.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica ser... gi\|168264729, gi... - gi\|205346855\|gb\|EDZ33486.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar ...	0.0	[1..365]	[1..365]
gi\|186895672, gi... - gi\|186895672\|ref\|YP_001872784.1\| N-ethylmaleimide reductase [Yersinia pseudotuberculosis PB1/+], gi\|... gi\|51589899, gi\|... - gi\|51596617\|ref\|YP_070808.1\| N-ethylmaleimide reductase [Yersinia pseudotuberculosis IP 32953], gi\|5... Q66A39\|Q66A39_YERPS - NADH:flavin oxidoreductase / NADH oxidase family protein - Yersinia pseudotuberculosis	0.0	[1..365]	[1..365]
gi\|194405865, gi... - gi\|194447561\|ref\|YP_002045474.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica ser... gi\|197242562, gi... - gi\|197264307\|ref\|ZP_03164381.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica sero... gi\|205327852, gi... - gi\|205327852\|gb\|EDZ14616.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar ... gi\|168240950, gi... - gi\|205339189\|gb\|EDZ25953.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar ... gi\|16419956, gi\|... - gi\|16764784\|ref\|NP_460399.1\| N-ethylmaleimide reductase [Salmonella typhimurium LT2], gi\|16419956\|gb... lcl\|NC_016856.1_... - [gene=nemA] [protein=N-ethylmaleimide reductase] [protein_id=YP_005237306.1] [location=complement(15...	0.0	[1..365]	[1..365]
gi\|62180025, gi\|... - gi\|62180025\|ref\|YP_216442.1\| N-ethylmaleimide reductase [Salmonella enterica subsp. enterica serovar...	0.0	[1..365]	[1..365]
gi\|38674622 - gi\|38674622\|gb\|AAR26328.1\| pentaerythritol tetranitrate reductase [Enterobacter cloacae]	0.0	[1..365]	[1..365]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTAKLFSPL KVGALTLPNR VFMAPLTRLR SIEPGDIPTP LMAEYYRQRA SAGLIITEAT  60
   61 QISFQAKGYA GAPGLHTQEQ LNAWKKVTQG VHNEGGHIAV QLWHVGRISH NSLQPGQQAP 120
  121 VAPSAIAADT RTTVRDETGA WVRVPCSTPR ALETEEIPGI INDFRQATAN AREAGFDYIE 180
  181 LHAAHGYLLH QFMSPASNQR TDQYGGSIEN RTRLTLEVVD ATAAEWGADR IGIRISPLGP 240
  241 FNGLDNGEDQ EEAALYLIDQ LNKRNIAYLH ISEPDWAGGK PYSDTFRAAV RAHFNGVIVG 300
  301 AGAYSAEKAE CLIQKGFIDA VAFGRSYISN PDLVTRLQQH APLNEPDSNT FYGGGAKGYT 360
  361 DYPTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1gvoA
Description:	Pentaerythritol tetranirate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on the CH-CH group of donors	2.11027907327307	bayes_pls_golite062009
catalytic activity	1.94749091175302	bayes_pls_golite062009
binding	1.2785695107981	bayes_pls_golite062009
coenzyme binding	0.99234662301893	bayes_pls_golite062009
oxidoreductase activity	0.84996661470385	bayes_pls_golite062009
nucleic acid binding	0.350068675013616	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.0276497014195508	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: