YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39654379, gi\|...
Organism:	Homo sapiens
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39654379, gi|....

Description	E-value	Query Range	Subject Range
gi\|55666388 - gi\|55666388\|emb\|CAH72426.1\| glucocorticoid modulatory element binding protein 1 [Homo sapiens]	160.0	[0..2]	[97..53]
gi\|57044018 - gi\|57044018\|ref\|XP_544456.1\| PREDICTED: similar to glucocorticoid modulatory element binding protein...	160.0	[0..2]	[97..87]
GMEB1_BOVIN - Glucocorticoid modulatory element-binding protein 1 OS=Bos taurus GN=GMEB1 PE=2 SV=1	160.0	[0..2]	[97..77]
gi\|114555134 - gi\|114555134\|ref\|XP_524637.2\| PREDICTED: glucocorticoid modulatory element binding protein 1 isoform...	160.0	[0..2]	[97..87]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMEDMEIAY PITCGESKAI LLWKKFVCPG INVKCVKFND QLISPKHFVH LAGKSTLKDW  60
   61 KRAIRLGGIM LRKMMDSGQI DFYQHDKVCS NTCRSTK

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Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1oqjA
Description:	Crystal structure of the SAND domain from glucocorticoid modulatory element binding protein-1 (GMEB1)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.068454432296695	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: