YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|217328445, gi...
Organism:	Escherichia coli O157:H7 str. TW14588
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|217328445, gi....

Description	E-value	Query Range	Subject Range
gi\|218364712, gi... - gi\|218557943\|ref\|YP_002390856.1\| DNA damage-inducible protein I [Escherichia coli S88], gi\|218364712... gi\|115512371, gi... - gi\|117623247\|ref\|YP_852160.1\| DNA damage-inducible protein I [Escherichia coli APEC O1], gi\|11551237...	133.0	[0..1]	[81..45]
gi\|237706953, gi... - gi\|237706953\|ref\|ZP_04537434.1\| DinI [Escherichia sp. 3_2_53FAA], gi\|226898163\|gb\|EEH84422.1\| DinI [... gi\|91071787, gi\|... - gi\|91210213\|ref\|YP_540199.1\| DNA damage-inducible protein I [Escherichia coli UTI89], gi\|91071787\|gb... gi\|26247201, gi\|... - gi\|26247201\|ref\|NP_753241.1\| DNA damage-inducible protein I [Escherichia coli CFT073], gi\|26107602\|g... gi\|24112472, gi\|... - ref\|NP_706982.1\| hypothetical protein SF1067 [Shigella flexneri 2a str. 301], gb\|AAN42689.1\| orf, c... gi\|110614627, gi... - gi\|110805079\|ref\|YP_688599.1\| DNA damage-inducible protein I [Shigella flexneri 5 str. 8401], gi\|110...	131.0	[0..1]	[81..20]
gi\|62127313, gi\|... - gi\|62179680\|ref\|YP_216097.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser...	130.0	[0..1]	[81..20]
gi\|81245884, gi\|... - gi\|82544473\|ref\|YP_408420.1\| DNA damage-inducible protein I [Shigella boydii Sb227], gi\|81245884\|gb\|... gi\|75175812, gi\|... - gi\|75175812\|ref\|ZP_00696007.1\| COG3920: Signal transduction histidine kinase [Shigella boydii BS512]...	124.0	[0..1]	[81..1]
gi\|56413850, gi\|... - gi\|56413850\|ref\|YP_150925.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser... gi\|224468861, gi... - gi\|224584334\|ref\|YP_002638132.1\| damage-inducible protein [Salmonella enterica subsp. enterica serov... gi\|205272880, gi... - gi\|205353099\|ref\|YP_002226900.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica... gi\|206709133, gi... - gi\|207857330\|ref\|YP_002243981.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica... gi\|198244968, gi... - gi\|198244968\|ref\|YP_002215975.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonell... gi\|204320285, gi... - gi\|204930826\|ref\|ZP_03221699.1\| DNA-damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|197261849, gi... - gi\|197261849\|ref\|ZP_03161923.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonella... gi\|197094250, gi... - gi\|197362773\|ref\|YP_002142410.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica... gi\|194713250, gi... - gi\|194737748\|ref\|YP_002114161.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonell... gi\|238911018 - gi\|238911018\|ref\|ZP_04654855.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|197251709, gi... - gi\|197251709\|ref\|YP_002146881.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonell... gi\|229037911 - gi\|229037911\|ref\|YP_216097.2\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica se... gi\|194403319, gi... - gi\|194444656\|ref\|YP_002040416.1\| DNA-damage-inducible protein I [Salmonella enterica subsp. enterica... gi\|194457062, gi... - gi\|194470698\|ref\|ZP_03076682.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonella... gi\|205347339, gi... - gi\|205347339\|gb\|EDZ33970.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonella ent... gi\|205341035, gi... - gi\|205341035\|gb\|EDZ27799.1\| DNA-damage-inducible protein I [Salmonella enterica subsp. enterica sero... gi\|205331909, gi... - gi\|205331909\|gb\|EDZ18673.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonella ent... gi\|197289810, gi... - gi\|197289810\|gb\|EDY29171.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonella ent... gi\|167553054, gi... - gi\|205322415\|gb\|EDZ10254.1\| DNA-damage-inducible protein I [Salmonella enterica subsp. enterica sero... gi\|205328069, gi... - gi\|205328069\|gb\|EDZ14833.1\| DNA damage-inducible protein I, inhibits UmuD processing [Salmonella ent... gi\|16419678, gi\|... - gi\|16764518\|ref\|NP_460133.1\| DNA damage-inducible protein I [Salmonella typhimurium LT2], gi\|1641967... lcl\|NC_016856.1_... - [gene=dinI] [protein=DNA damage-inducible protein I] [protein_id=YP_005236915.1] [location=complemen... gi\|161614618, gi... - gi\|161614618\|ref\|YP_001588583.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica...	124.0	[0..1]	[81..1]
gi\|238789124, gi... - gi\|77974932\|ref\|ZP_00830470.1\| hypothetical protein YfreA_01001432 [Yersinia frederiksenii ATCC 3364...	123.0	[0..1]	[81..1]
gi\|213427719 - gi\|213427719\|ref\|ZP_03360469.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213420268 - gi\|213420268\|ref\|ZP_03353334.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213053066 - gi\|213053066\|ref\|ZP_03345944.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213977676 - gi\|213977676\|ref\|ZP_03404935.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213864909 - gi\|213864909\|ref\|ZP_03387028.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213647667 - gi\|213647667\|ref\|ZP_03377720.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|213579680 - gi\|213579680\|ref\|ZP_03361506.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ... gi\|16760038 - gi\|16760038\|ref\|NP_455655.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser... gi\|25512012, gi\|... - gi\|25512012\|pir\|\|AC0638 damage-inducible protein [imported] - Salmonella enterica subsp. enterica se... gi\|29142191, gi\|... - gi\|29142191\|ref\|NP_805533.1\| DNA damage-inducible protein I [Salmonella enterica subsp. enterica ser...	123.0	[0..1]	[81..1]
gi\|165992538, gi... - gi\|166008156\|ref\|ZP_02229054.1\| DNA-damage-inducible protein I [Yersinia pestis biovar Antiqua str. ... gi\|166204165, gi... - gi\|166214650\|ref\|ZP_02240685.1\| DNA-damage-inducible protein I [Yersinia pestis biovar Antiqua str. ... Q669K1\|Q669K1_YERPS - DNA-damage-inducible protein I - Yersinia pseudotuberculosis gi\|167402378, gi... - gi\|167402378\|ref\|ZP_02307841.1\| DNA-damage-inducible protein I [Yersinia pestis biovar Antiqua str. ... gi\|167421839, gi... - gi\|167421839\|ref\|ZP_02313592.1\| DNA-damage-inducible protein I [Yersinia pestis biovar Orientalis st... gi\|165911913, gi... - gi\|89102600\|ref\|ZP_01175221.1\| hypothetical protein Ypesb_01003373 [Yersinia pestis biovar Orientali... gi\|167470023 - gi\|167470023\|ref\|ZP_02334727.1\| DNA-damage-inducible protein I [Yersinia pestis FV-1] gi\|108779849, gi... - gi\|108807936\|ref\|YP_651852.1\| DNA damage-inducible protein I [Yersinia pestis Antiqua], gi\|108779849... gi\|169750449, gi... - gi\|170023915\|ref\|YP_001720420.1\| DNA damage-inducible protein I [Yersinia pseudotuberculosis YPIII],... gi\|229703451, gi... - gi\|229894432\|ref\|ZP_04509614.1\| DNA damage-inducible protein I [Yersinia pestis Pestoides A], gi\|229... gi\|229680421, gi... - gi\|229902529\|ref\|ZP_04517647.1\| DNA damage-inducible protein I [Yersinia pestis Nepal516], gi\|229680... gi\|186698902, gi... - gi\|186895876\|ref\|YP_001872988.1\| DNA damage-inducible protein I [Yersinia pseudotuberculosis PB1/+],... gi\|229843686, gi... - gi\|229843686\|ref\|ZP_04463829.1\| DNA damage-inducible protein I [Yersinia pestis biovar Orientalis st... gi\|229841574, gi... - gi\|229841574\|ref\|ZP_04461733.1\| DNA damage-inducible protein I [Yersinia pestis biovar Orientalis st... gi\|45436919, gi\|... - gi\|45442056\|ref\|NP_993595.1\| DNA damage-inducible protein I [Yersinia pestis biovar Microtus str. 91... gi\|25510316 - pir\|\|AE0193 DNA-damage-inducible protein I [imported] - Yersinia pestis (strain CO92) gi\|162421582, gi... - gi\|77635273\|ref\|ZP_00797359.1\| hypothetical protein YpesA_01001283 [Yersinia pestis Angola], gi\|1624... gi\|15979624, gi\|... - gi\|218928722\|ref\|YP_002346597.1\| DNA damage-inducible protein I [Yersinia pestis CO92], gi\|16121854\|... gi\|77629542, gi\|... - gi\|77629542\|ref\|ZP_00792128.1\| hypothetical protein YpseI_01000880 [Yersinia pseudotuberculosis IP 3... gi\|51596805, gi\|... - gi\|51596805\|ref\|YP_070996.1\| DNA damage-inducible protein I [Yersinia pseudotuberculosis IP 32953], ... gi\|165924399, gi... - gi\|165924399\|ref\|ZP_02220231.1\| DNA-damage-inducible protein I [Yersinia pestis biovar Orientalis st... gi\|145210838, gi... - gi\|145599142\|ref\|YP_001163218.1\| DNA damage-inducible protein I [Yersinia pestis Pestoides F], gi\|14... gi\|149290876, gi... - gi\|149366502\|ref\|ZP_01888536.1\| DNA-damage-inducible protein I [Yersinia pestis CA88-4125], gi\|14929...	123.0	[0..1]	[81..1]
gi\|77979986, gi\|... - gi\|77979986\|ref\|ZP_00835401.1\| hypothetical protein YintA_01000034 [Yersinia intermedia ATCC 29909],...	122.0	[0..1]	[81..1]
gi\|81241473, gi\|... - gi\|82777325\|ref\|YP_403674.1\| DNA damage-inducible protein I [Shigella dysenteriae Sd197], gi\|8124147...	121.0	[0..1]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIEVTIAKT SPLPAGAIDA LAGELSRRIQ YAFPDNEGHV SVRYAAANNL SVIGATKEDK  60
   61 QRISEILQET WESADDWFVS E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1ghhA
Description:	DNA damage-inducible protein DinI
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits