YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224501010
Organism:	Listeria monocytogenes FSL R2-561
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224501010.

Description	E-value	Query Range	Subject Range
gi\|47019870, gi\|... - gi\|47091859\|ref\|ZP_00229654.1\| negative regulator of competence MecA [Listeria monocytogenes str. 4b... gi\|254825246 - gi\|254825246\|ref\|ZP_05230247.1\| adaptor protein [Listeria monocytogenes FSL J1-194] MECA_LISMC - Adapter protein mecA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mecA PE=3 SV=1 gi\|254878194 - gi\|254878194\|ref\|ZP_05250904.1\| adaptor protein [Listeria monocytogenes FSL J2-071] gi\|254853315 - gi\|254853315\|ref\|ZP_05242663.1\| adaptor protein [Listeria monocytogenes FSL R2-503] gi\|255520806 - gi\|255520806\|ref\|ZP_05388043.1\| adaptor protein [Listeria monocytogenes FSL J1-175] gi\|254993090 - gi\|254993090\|ref\|ZP_05275280.1\| adaptor protein [Listeria monocytogenes FSL J2-064] MECA_LISMF - Adapter protein MecA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=mecA PE=3 SV=1 gi\|153168083, gi... - gi\|153168083\|ref\|ZP_01928114.1\| negative regulator of competence MecA [Listeria monocytogenes FSL N1... gi\|153203290, gi... - gi\|254931697\|ref\|ZP_05265056.1\| adaptor protein [Listeria monocytogenes HPB2262], gi\|153203290\|ref\|Z... MECA_LISMC - Adapter protein MecA OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=mecA PE=3 SV=1	262.0	[0..1]	[217..1]
MECA_LISIN - Adapter protein MecA OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=mecA PE=3 SV=1 MECA_LISIN - Adapter protein mecA OS=Listeria innocua GN=mecA PE=3 SV=1	259.0	[0..1]	[217..1]
MECA_BACPF - Adapter protein mecA OS=Bacillus pseudofirmus GN=mecA PE=3 SV=1 gi\|2952027 - gi\|2952027\|gb\|AAC05443.1\| MecA homolog [Bacillus firmus] MECA_BACPE - Adapter protein MecA OS=Bacillus pseudofirmus (strain OF4) GN=mecA PE=3 SV=1	234.0	[0..1]	[217..1]
gi\|218542359, gi... - gi\|218896228\|ref\|YP_002444639.1\| negative regulator of competence MecA [Bacillus cereus G9842], gi\|2... gi\|74491260, gi\|... - gi\|75761252\|ref\|ZP_00741235.1\| Negative regulator of genetic competence mecA [Bacillus thuringiensis... gi\|228807959, gi... - gi\|228951674\|ref\|ZP_04113776.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar kurstaki str.... gi\|228899874, gi... - gi\|228899874\|ref\|ZP_04064119.1\| Adapter protein mecA 1 [Bacillus thuringiensis IBL 4222], gi\|2288597... gi\|228714267, gi... - gi\|229068849\|ref\|ZP_04202144.1\| Adapter protein mecA 1 [Bacillus cereus F65185], gi\|228714267\|gb\|EEL... gi\|228964240, gi... - gi\|228964240\|ref\|ZP_04125360.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar sotto str. T0... gi\|228594093, gi... - gi\|229189382\|ref\|ZP_04316401.1\| Adapter protein mecA 1 [Bacillus cereus ATCC 10876], gi\|228594093\|gb... gi\|228704804, gi... - gi\|229078488\|ref\|ZP_04211048.1\| Adapter protein mecA 1 [Bacillus cereus Rock4-2], gi\|228704804\|gb\|EE... gi\|206737077, gi... - gi\|206968157\|ref\|ZP_03229113.1\| negative regulator of competence MecA [Bacillus cereus AH1134], gi\|2...	234.0	[0..1]	[217..1]
gi\|229149497, gi... - gi\|229149497\|ref\|ZP_04277732.1\| Adapter protein mecA 1 [Bacillus cereus m1550], gi\|228633970\|gb\|EEK9... gi\|228656839, gi... - gi\|229126602\|ref\|ZP_04255615.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-Cer4], gi\|228656839\|gb\|... MECA1_BACCR - Adapter protein MecA 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM... gi\|228639564, gi... - gi\|229143903\|ref\|ZP_04272321.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-ST24], gi\|228639564\|gb\|... gi\|228726281, gi... - gi\|229043040\|ref\|ZP_04190770.1\| Adapter protein mecA 1 [Bacillus cereus AH676], gi\|228726281\|gb\|EEL7... gi\|218235246, gi... - gi\|218235246\|ref\|YP_002365977.1\| negative regulator of competence MecA [Bacillus cereus B4264], gi\|2... gi\|229108754, gi... - gi\|229108754\|ref\|ZP_04238362.1\| Adapter protein mecA 1 [Bacillus cereus Rock1-15], gi\|228674693\|gb\|E...	233.0	[0..1]	[217..1]
gi\|42736304, gi\|... - gi\|42780385\|ref\|NP_977632.1\| adaptor protein [Bacillus cereus ATCC 10987], gi\|42736304\|gb\|AAS40240.1...	233.0	[0..1]	[217..1]
gi\|49184131, gi\|... - gi\|49184131\|ref\|YP_027383.1\| adaptor protein [Bacillus anthracis str. Sterne], gi\|49178058\|gb\|AAT534... gi\|52144141, gi\|... - gi\|52144141\|ref\|YP_082688.1\| adaptor protein [Bacillus cereus E33L], gi\|51977610\|gb\|AAU19160.1\| nega... MECA1_BACAN - Adapter protein MecA 1 OS=Bacillus anthracis GN=mecA1 PE=3 SV=2 gi\|21399114, gi\|... - gi\|65318567\|ref\|ZP_00391526.1\| COG4862: Negative regulator of genetic competence, sporulation and mo... gi\|167641200, gi... - gi\|167641200\|ref\|ZP_02399454.1\| negative regulator of competence MecA [Bacillus anthracis str. A0193... gi\|165872855, gi... - gi\|165872855\|ref\|ZP_02217481.1\| negative regulator of competence MecA [Bacillus anthracis str. A0488... gi\|225863145, gi... - gi\|225863145\|ref\|YP_002748523.1\| negative regulator of competence MecA [Bacillus cereus 03BB102], gi... gi\|227815960, gi... - gi\|227815960\|ref\|YP_002815969.1\| negative regulator of competence MecA [Bacillus anthracis str. CDC ... gi\|228932569, gi... - gi\|228932569\|ref\|ZP_04095449.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar andalousiensi... gi\|228645327, gi... - gi\|229137982\|ref\|ZP_04266580.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-ST26], gi\|228645327\|gb\|... gi\|228599906, gi... - gi\|229183496\|ref\|ZP_04310720.1\| Adapter protein mecA 1 [Bacillus cereus BGSC 6E1], gi\|228599906\|gb\|E... gi\|229195491, gi... - gi\|229195491\|ref\|ZP_04322259.1\| Adapter protein mecA 1 [Bacillus cereus m1293], gi\|228588031\|gb\|EEK4... gi\|229602358, gi... - gi\|229602358\|ref\|YP_002865721.1\| negative regulator of competence MecA [Bacillus anthracis str. A024... gi\|254682638 - gi\|254682638\|ref\|ZP_05146499.1\| adaptor protein [Bacillus anthracis str. CNEVA-9066] gi\|254725433 - gi\|254725433\|ref\|ZP_05187215.1\| adaptor protein [Bacillus anthracis str. A1055] gi\|254734056 - gi\|254734056\|ref\|ZP_05191770.1\| adaptor protein [Bacillus anthracis str. Western North America USA61... gi\|254753639 - gi\|254753639\|ref\|ZP_05205675.1\| adaptor protein [Bacillus anthracis str. Vollum] gi\|254758736 - gi\|254758736\|ref\|ZP_05210763.1\| adaptor protein [Bacillus anthracis str. Australia 94] gi\|170708881, gi... - gi\|170708881\|ref\|ZP_02899315.1\| negative regulator of competence MecA [Bacillus anthracis str. A0389... gi\|170686844, gi... - gi\|170686844\|ref\|ZP_02878064.1\| negative regulator of competence MecA [Bacillus anthracis str. A0465... gi\|190569165, gi... - gi\|190569165\|ref\|ZP_03022063.1\| negative regulator of competence MecA [Bacillus anthracis Tsiankovsk... gi\|177654442, gi... - gi\|177654442\|ref\|ZP_02936339.1\| negative regulator of competence MecA [Bacillus anthracis str. A0174... gi\|196024966, gi... - gi\|196044327\|ref\|ZP_03111563.1\| negative regulator of competence MecA [Bacillus cereus 03BB108], gi\|... gi\|196036234, gi... - gi\|196036234\|ref\|ZP_03103633.1\| negative regulator of competence MecA [Bacillus cereus W], gi\|195991... gi\|217958771, gi... - gi\|217958771\|ref\|YP_002337319.1\| negative regulator of competence MecA [Bacillus cereus AH187], gi\|2... gi\|206977661, gi... - gi\|206977661\|ref\|ZP_03238553.1\| negative regulator of competence MecA [Bacillus cereus H3081.97], gi... gi\|118476769, gi... - gi\|118476769\|ref\|YP_893920.1\| adaptor protein [Bacillus thuringiensis str. Al Hakam], gi\|118415994\|g...	233.0	[0..1]	[217..1]
gi\|229120817, gi... - gi\|229120817\|ref\|ZP_04250059.1\| Adapter protein mecA 1 [Bacillus cereus 95/8201], gi\|228662477\|gb\|EE... gi\|228693084, gi... - gi\|229090238\|ref\|ZP_04221484.1\| Adapter protein mecA 1 [Bacillus cereus Rock3-42], gi\|228693084\|gb\|E... gi\|228944902, gi... - gi\|228944902\|ref\|ZP_04107264.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar monterrey BGS... gi\|228926332, gi... - gi\|228926332\|ref\|ZP_04089405.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar pondicheriens... gi\|49330765, gi\|... - gi\|49479209\|ref\|YP_035430.1\| adaptor protein [Bacillus thuringiensis serovar konkukian str. 97-27], ... gi\|218902391, gi... - gi\|218902391\|ref\|YP_002450225.1\| negative regulator of competence MecA [Bacillus cereus AH820], gi\|2... gi\|196031782, gi... - gi\|196037540\|ref\|ZP_03104851.1\| negative regulator of competence MecA [Bacillus cereus NVH0597-99], ... gi\|228913868, gi... - gi\|228913868\|ref\|ZP_04077493.1\| Adapter protein mecA 1 [Bacillus thuringiensis serovar pulsiensis BG...	232.0	[0..1]	[217..1]
gi\|89200596, gi\|... - gi\|89200596\|ref\|ZP_01179348.1\| Negative regulator of genetic competence [Bacillus cereus subsp. cyto...	230.0	[0..1]	[217..1]
gi\|228651358, gi... - gi\|229132090\|ref\|ZP_04260951.1\| Adapter protein mecA 1 [Bacillus cereus BDRD-ST196], gi\|228651358\|gb... gi\|163939092, gi... - gi\|89204584\|ref\|ZP_01183161.1\| Negative regulator of genetic competence [Bacillus weihenstephanensis...	228.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIERINEDT IKFYISYLDL EERGFNQEDV WYDREKSEEL FWDMMDELKY EEEFSPEGPL  60
   61 WIQVQALKHG LEVFVTKATI GGKGEDGFDV TLSSPDELAE EKIEKLLEEN FNPVKKEALG 120
  121 EDDTLEFILE FRDFEDAISL SRATGLENLV TKLYSYQGKY YLNVEF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [167-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PENKYDESNI DNAVSILLEY GLESNLTGYM LAEYGKVIFD VPALKQIRKH F

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits