YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|39654060
Organism:	Haemophilus influenzae
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39654060.

Description	E-value	Query Range	Subject Range
gi\|52306585, gi\|... - gi\|52424533\|ref\|YP_087670.1\| hypothetical protein MS0478 [Mannheimia succiniciproducens MBEL55E], gi...	232.0	[0..4]	[184..17]
gi\|161936216 - gi\|161936216\|ref\|YP_152080.2\| hypothetical protein SPA2927 [Salmonella enterica subsp. enterica sero... YGFB_SALTY - UPF0149 protein YgfB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ygfB PE=3 SV... YGFB_SALDC - UPF0149 protein YgfB OS=Salmonella dublin (strain CT_02021853) GN=ygfB PE=3 SV=1 gi\|200389239, gi... - gi\|200389239\|ref\|ZP_03215851.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Vir... gi\|204928410, gi... - gi\|204928410\|ref\|ZP_03219610.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Jav... YGFB_SALG2 - UPF0149 protein YgfB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ygfB PE=3 SV=1 gi\|194471320, gi... - gi\|194471320\|ref\|ZP_03077304.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Ken... YGFB_SALSV - UPF0149 protein YgfB OS=Salmonella schwarzengrund (strain CVM19633) GN=ygfB PE=3 SV=1 YGFB_SALA4 - UPF0149 protein YgfB OS=Salmonella agona (strain SL483) GN=ygfB PE=3 SV=1 gi\|197243460, gi... - gi\|197265205\|ref\|ZP_03165279.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Sai... gi\|205338191, gi... - gi\|205338191\|gb\|EDZ24955.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Heidelb... gi\|168463766, gi... - gi\|195633529\|gb\|EDX51943.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Newport... YGFB_SALNS - UPF0149 protein YgfB OS=Salmonella newport (strain SL254) GN=ygfB PE=3 SV=1 YGFB_SALHS - UPF0149 protein YgfB OS=Salmonella heidelberg (strain SL476) GN=ygfB PE=3 SV=1 gi\|162139550 - gi\|162139550\|ref\|YP_217987.2\| hypothetical protein SC3000 [Salmonella enterica subsp. enterica serov... gi\|205322278, gi... - gi\|205322278\|gb\|EDZ10117.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Saintpa... YGFB_SALTY - UPF0149 protein ygfB OS=Salmonella typhimurium GN=ygfB PE=3 SV=2 lcl\|NC_016856.1_... - [gene=ygfB] [protein=hypothetical protein] [protein_id=YP_005239199.1] [location=complement(3240121.... gi\|167990426, gi... - gi\|205331113\|gb\|EDZ17877.1\| YecA family protein [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|197290799, gi... - gi\|197290799\|gb\|EDY30153.1\| YecA family protein [Salmonella enterica subsp. enterica serovar Schwarz... YGFB_SALPC - UPF0149 protein YgfB OS=Salmonella paratyphi C (strain RKS4594) GN=ygfB PE=3 SV=1 gi\|205358817, gi... - gi\|205358817\|ref\|ZP_02659355.2\| YecA family protein [Salmonella enterica subsp. enterica serovar Ken... gi\|205359737, gi... - gi\|205359737\|ref\|ZP_02831916.2\| YecA family protein [Salmonella enterica subsp. enterica serovar Wel... gi\|205360782, gi... - gi\|205360782\|ref\|ZP_02686482.2\| YecA family protein [Salmonella enterica subsp. enterica serovar Had... YGFB_SALTY - UPF0149 protein ygfB OS=Salmonella typhimurium GN=ygfB PE=3 SV=2 YGFB_SALEP - UPF0149 protein YgfB OS=Salmonella enteritidis PT4 (strain P125109) GN=ygfB PE=3 SV=1	223.0	[0..2]	[184..5]
gi\|56129262, gi\|... - gi\|56415005\|ref\|YP_152080.1\| hypothetical protein SPA2927 [Salmonella enterica subsp. enterica serov... gi\|238909859 - gi\|238909859\|ref\|ZP_04653696.1\| hypothetical protein SentesTe_01815 [Salmonella enterica subsp. ente... gi\|62181570, gi\|... - gi\|62181570\|ref\|YP_217987.1\| hypothetical protein SC3000 [Salmonella enterica subsp. enterica serova... gi\|197363934, gi... - gi\|197363934\|ref\|YP_002143571.1\| hypothetical protein SSPA2729 [Salmonella enterica subsp. enterica ... gi\|16421610 - gi\|16421610\|gb\|AAL21934.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serovar...	223.0	[0..2]	[184..7]
gi\|213999422 - gi\|213999422\|ref\|ZP_03410157.1\| hypothetical protein Salmonellentericaenterica_01227 [Salmonella ent... Y3215_SALTI - UPF0149 protein YgfB OS=Salmonella typhi GN=ygfB PE=3 SV=2 gi\|161501921 - gi\|161501921\|ref\|NP_457457.2\| hypothetical protein STY3215 [Salmonella enterica subsp. enterica sero... gi\|213418754 - gi\|213418754\|ref\|ZP_03351820.1\| hypothetical protein Salmonentericaenterica_13214 [Salmonella enteri... gi\|213583280 - gi\|213583280\|ref\|ZP_03365106.1\| hypothetical protein SentesTyph_19568 [Salmonella enterica subsp. en... gi\|213609656 - gi\|213609656\|ref\|ZP_03369482.1\| hypothetical protein SentesTyp_03635 [Salmonella enterica subsp. ent... gi\|161486786 - gi\|161486786\|ref\|NP_806669.2\| hypothetical protein t2977 [Salmonella enterica subsp. enterica serova... Y3215_SALTI, YW1... - (Q8Z3W5) Hypothetical UPF0149 protein ygfB, UPF0149 protein ygfB OS=Salmonella typhi GN=ygfB PE=3 SV...	223.0	[0..2]	[184..5]
gi\|29143327, gi\|... - gi\|29143327\|ref\|NP_806669.1\| hypothetical protein t2977 [Salmonella enterica subsp. enterica serovar... gi\|213427302 - gi\|213427302\|ref\|ZP_03360052.1\| hypothetical protein SentesTyphi_17882 [Salmonella enterica subsp. e... gi\|16761840 - gi\|16761840\|ref\|NP_457457.1\| hypothetical protein STY3215 [Salmonella enterica subsp. enterica serov... gi\|213162876 - gi\|213162876\|ref\|ZP_03348586.1\| hypothetical protein Salmoneentericaenterica_23786 [Salmonella enter... gi\|16504142, gi\|... - gi\|25355606\|pir\|\|AI0873 conserved hypothetical protein STY3215 [imported] - Salmonella enterica subs... gi\|213974935 - gi\|213974935\|ref\|ZP_03402194.1\| hypothetical protein Salmonellaentericaenterica_10298 [Salmonella en... gi\|213854922 - gi\|213854922\|ref\|ZP_03383162.1\| hypothetical protein SentesT_12895 [Salmonella enterica subsp. enter...	222.0	[0..2]	[184..7]
Y1723_PASMU - UPF0149 protein PM1723 OS=Pasteurella multocida (strain Pm70) GN=PM1723 PE=3 SV=1 Y1723_PASMU, YH2... - (Q9CKA2) Hypothetical UPF0149 protein PM1723, UPF0149 protein PM1723 OS=Pasteurella multocida GN=PM1...	221.0	[0..4]	[184..1]
gi\|170717311, gi... - gi\|32030835\|ref\|ZP_00133587.1\| COG3079: Uncharacterized protein conserved in bacteria [Haemophilus s...	219.0	[0..7]	[184..8]
gi\|238725453, gi... - gi\|77978891\|ref\|ZP_00834314.1\| COG3079: Uncharacterized protein conserved in bacteria [Yersinia inte...	219.0	[0..2]	[184..5]
gi\|81242474, gi\|... - gi\|82778326\|ref\|YP_404675.1\| hypothetical protein SDY_3172 [Shigella dysenteriae Sd197], gi\|81242474...	218.0	[0..2]	[184..7]
YGFB_SHIFL - UPF0149 protein YgfB OS=Shigella flexneri GN=ygfB PE=3 SV=1 gi\|30042477, gi\|... - gi\|30064220\|ref\|NP_838391.1\| hypothetical protein S3094 [Shigella flexneri 2a str. 2457T], gi\|300424... sp\|B7UHV7\|YGFB_ECO27 - UPF0149 protein ygfB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ygfB PE=3 SV=1 gi\|229560213 - gi\|229560213\|ref\|YP_670787.2\| hypothetical protein ECP_2902 [Escherichia coli 536] gi\|229597232 - gi\|229597232\|ref\|YP_001723799.2\| hypothetical protein EcolC_0800 [Escherichia coli ATCC 8739] gi\|229775961 - gi\|229775961\|ref\|YP_854127.2\| hypothetical protein APECO1_3619 [Escherichia coli APEC O1] YGFB_ECOBW - UPF0149 protein YgfB OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ygfB PE=3 SV=1 gi\|242378440, gi... - gi\|251786167\|ref\|YP_003000471.1\| hypothetical protein B21_02704 [Escherichia coli BL21], gi\|24237844... YGFB_ECOLI - UPF0149 protein ygfB - Escherichia coli gi\|253974722, gi... - gi\|254162821\|ref\|YP_003045929.1\| hypothetical protein ECB_02741 [Escherichia coli B str. REL606], gi... gi\|254289581, gi... - gi\|254289581\|ref\|YP_003055329.1\| hypothetical protein ECD_02741 [Escherichia coli BL21(DE3)], gi\|253... gi\|254594258, gi... - gi\|254794858\|ref\|YP_003079695.1\| hypothetical protein ECSP_3876 [Escherichia coli O157:H7 str. TW143... gi\|168753850, gi... - gi\|189358458\|gb\|EDU76877.1\| YecA family protein [Escherichia coli O157:H7 str. EC4401], gi\|168753850... gi\|162139720 - gi\|162139720\|ref\|NP_311807.3\| hypothetical protein ECs3780 [Escherichia coli O157:H7 str. Sakai] gi\|187776139, gi... - gi\|187776139\|ref\|ZP_02800796.2\| YecA family protein [Escherichia coli O157:H7 str. EC4196], gi\|18776... YGFB_ECODH - UPF0149 protein YgfB OS=Escherichia coli (strain K12 / DH10B) GN=ygfB PE=3 SV=1 gi\|189009923, gi... - gi\|189009923\|ref\|ZP_02803932.2\| YecA family protein [Escherichia coli O157:H7 str. EC4076], gi\|18900... gi\|188024616, gi... - gi\|188024616\|ref\|ZP_02772631.2\| YecA family protein [Escherichia coli O157:H7 str. EC4113], gi\|18801... gi\|189404741, gi... - gi\|189404741\|ref\|ZP_02810765.2\| YecA family protein [Escherichia coli O157:H7 str. EC869], gi\|189373... gi\|189403774, gi... - gi\|189403774\|ref\|ZP_02785047.2\| YecA family protein [Escherichia coli O157:H7 str. EC4501], gi\|18936... YGFB_ECOL6 - UPF0149 protein YgfB OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ygfB PE=3 SV=... gi\|161367534 - gi\|161367534\|ref\|NP_289477.2\| hypothetical protein Z4246 [Escherichia coli O157:H7 EDL933] gi\|161986458 - gi\|161986458\|ref\|YP_311886.2\| hypothetical protein SSON_3062 [Shigella sonnei Ss046] gi\|161984859 - gi\|161984859\|ref\|YP_409416.2\| hypothetical protein SBO_3083 [Shigella boydii Sb227] YGFB_ECO8A - UPF0149 protein YgfB OS=Escherichia coli O8 (strain IAI1) GN=ygfB PE=3 SV=1 YGFB_ESCF3 - UPF0149 protein YgfB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ygfB... YGFB_ECO81 - UPF0149 protein YgfB OS=Escherichia coli O81 (strain ED1a) GN=ygfB PE=3 SV=1 YGFB_ECO45 - UPF0149 protein YgfB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ygfB PE=3 SV=1 YGFB_ECO7I - UPF0149 protein YgfB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ygfB PE=3 SV=1 YGFB_ECO55 - UPF0149 protein YgfB OS=Escherichia coli (strain 55989 / EAEC) GN=ygfB PE=3 SV=1 YGFB_ECOLU - UPF0149 protein YgfB OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ygfB PE=3 SV=1 gi\|208807052, gi... - gi\|208807052\|ref\|ZP_03249389.1\| YecA family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195936527 - gi\|195936527\|ref\|ZP_03081909.1\| hypothetical protein EscherichcoliO157_08697 [Escherichia coli O157:... gi\|208821067, gi... - gi\|208821067\|ref\|ZP_03261387.1\| YecA family protein [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|208813371, gi... - gi\|208813371\|ref\|ZP_03254700.1\| YecA family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... YGFB_ECOSE - UPF0149 protein YgfB OS=Escherichia coli (strain SE11) GN=ygfB PE=3 SV=1 YGFB_ECO5E - UPF0149 protein YgfB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ygfB PE=3 SV=1 gi\|217320115, gi... - gi\|217327748\|ref\|ZP_03443831.1\| YecA family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... YGFB_ECO27 - UPF0149 protein YgfB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ygfB PE=3 SV=1 YGFB_ECO57 - UPF0149 protein YgfB OS=Escherichia coli O157:H7 GN=ygfB PE=3 SV=1 YGFB_ECOL6 - UPF0149 protein ygfB OS=Escherichia coli O6 GN=ygfB PE=3 SV=1 gi\|75258509 - gi\|75258509\|ref\|ZP_00729931.1\| COG3079: Uncharacterized protein conserved in bacteria [Escherichia c... EG11323 - UPF0149 family protein / UPF0149 family protein, function unknown gi\|85675721, gi\|... - gi\|89109688\|ref\|AP_003468.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|56480198, gi\|... - gi\|56480198\|ref\|NP_708672.2\| hypothetical protein SF2895 [Shigella flexneri 2a str. 301], gi\|5638374... gi\|83587695 - gi\|83587695\|ref\|ZP_00926322.1\| COG3079: Uncharacterized protein conserved in bacteria [Escherichia c... YGFB_SHIB3 - UPF0149 protein YgfB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ygfB PE=3 SV=1 YGFB_ECO24 - UPF0149 protein YgfB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ygfB PE=3 SV=1 YGFB_ECOHS - UPF0149 protein YgfB OS=Escherichia coli O9:H4 (strain HS) GN=ygfB PE=3 SV=1 gi\|194426366, gi... - gi\|75212476\|ref\|ZP_00712500.1\| COG3079: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75227227 - gi\|75227227\|ref\|ZP_00714027.1\| COG3079: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75234637 - gi\|75234637\|ref\|ZP_00718968.1\| COG3079: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75239252 - gi\|75239252\|ref\|ZP_00723225.1\| COG3079: Uncharacterized protein conserved in bacteria [Escherichia c... EG11323 - UPF0149 family protein / UPF0149 family protein, function unknown	217.0	[0..2]	[184..5]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSXLISHSDX NQQLKSAGIG FNATELHGFL SGLLCGGLKD QSWLPLLYQF SNDNHAYPTG  60
   61 LVQPVTELYE QISQTLSDVE GFTFELGLTE DENVFTQADS LSDWANQFLL GIGLAQPELA 120
  121 KEKGEIGEAV DDLQDICQLG YDEDDNEEEL AEALEEIIEY VRTIAXLFYS HFNEGEIESK 180
  181 PVLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.154902
Match:	1izmA
Description:	Structure of ygfB from Haemophilus influenzae (HI0817), a Conserved Hypothetical Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits