YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7245309, gi\|3...
Organism:	Homo sapiens
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7245309, gi|3....

Description	E-value	Query Range	Subject Range
gi\|74198050, gi\|... - gi\|74198050\|dbj\|BAE35205.1\| unnamed protein product [Mus musculus], gi\|74198042\|dbj\|BAE35201.1\| unna...	197.0	[0..1]	[168..334]
gi\|68360288 - gi\|68360288\|ref\|XP_683230.1\| PREDICTED: similar to TNF receptor-associated factor 2 [Danio rerio]	193.0	[0..1]	[168..399]
gi\|109109697, gi... - gi\|109109697\|ref\|XP_001092320.1\| PREDICTED: similar to TNF receptor-associated factor 2 isoform 3 [M...	193.0	[0..1]	[168..334]
gi\|197246497, gi... - gi\|197246497\|gb\|AAI69064.1\| Tnf receptor-associated factor 2 [Rattus norvegicus], gi\|157821941\|ref\|N...	193.0	[0..1]	[168..330]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AMADLEQKVL EMEASTYDGV FIWKISDFPR KRQEAVAGRI PAIFSPAFYT SRYGYKMCLR  60
   61 IYLNGDGTGR GTHLSLFFVV MKGPNDALLR WPFNQKVTLM LLDQNNREHV IDAFRPDVTS 120
  121 SSFQRPVNDM NIASGCPLFC PVSKMEAKNS YVRDDAIFIK AIVDLTGL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1qscA
Description:	TNF receptor associated factor 2 (TRAF2); TRAF2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits