YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIE_PSEA8
Organism:	Pseudomonas aeruginosa LESB58
Length:	256 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIE_PSEA8.

Description	E-value	Query Range	Subject Range
gi\|107104162 - gi\|107104162\|ref\|ZP_01368080.1\| hypothetical protein PaerPA_01005235 [Pseudomonas aeruginosa PACS2]	2.0E-63	[1..256]	[1..256]
UBIE_PSE14 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas savastanoi pv. phaseolic... UBIE_PSEU2 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas syringae pv. syringae (s...	2.0E-61	[1..256]	[1..256]
UBIE_PSEA7 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas aeruginosa (strain PA7) ...	2.0E-61	[1..256]	[1..256]
UBIE_PSESM - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pseudomonas syringae pv. tomato GN=ubi... UBIE_PSESM - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas syringae pv. tomato (str... gi\|213969424, gi... - gi\|213969424\|ref\|ZP_03397561.1\| ubiquinone/menaquinone biosynthesis methlytransferase UbiE [Pseudomo...	2.0E-61	[1..256]	[1..256]
UBIE_PSEE4 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas entomophila (strain L48)... gi\|95112978 - gi\|95112978\|emb\|CAK17706.1\| ubiquinone biosynthesis methyltransferase [Pseudomonas entomophila L48]	3.0E-61	[1..256]	[1..256]
gi\|70733931, gi\|... - gi\|70733931\|ref\|YP_257571.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Pseudomonas fluo...	7.0E-61	[1..256]	[53..308]
UBIE_PSEPU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas putida GN=ubiE PE=3 SV=1	7.0E-61	[1..256]	[1..256]
tr\|E4R9G6\|E4R9G6... - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pseudomonas putida (strain BIRD-1) GN=... UBIE_PSEPK - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas putida (strain KT2440) G... UBIE_PSEP1 - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas putida (strain F1 / ATCC... tr\|I7C4V3\|I7C4V3... - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Pseudomonas putida (strain DOT-T1E) GN...	1.0E-60	[1..256]	[1..256]
UBIE_PSEPF - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Pseudomonas fluorescens (strain Pf0-...	2.0E-60	[1..256]	[1..256]
UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain CMCP6) GN=... UBIE_VIBVY - Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE OS=Vibrio vulnificus (strain YJ016) GN=... UBIE_VIBVU - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Vibrio vulnificus GN=ubiE PE=3 SV=1	4.0E-60	[3..255]	[7..259]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDPRKGADA EPTTHFGYQN VPESQKAKKV AEVFHSVAAK YDLMNDLMSG GIHRLWKRFT  60
   61 IELSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	2ex4A
Description:	Crystal Structure of Human methyltransferase AD-003 in complex with S-adenosyl-L-homocysteine
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [66-256]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRSGNRVLDI AGGTGDLTRQ FSRLVGPTGE VVLADINASM LKVGRDKLLD KGVSGNVSFV  60
   61 QADAEKLPFP DNHFDCVTIA FGLRNVTHKD EAIRSMLRVL KPGGRLLVLE FSKPSSNLLS 120
  121 KAYDAYSFSL LPLMGKLVTN DSESYRYLAE SIRMHPDQET LKAMMVEAGF DRVTYHNMTG 180
  181 GIVALHRGIK P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.39794
Match:	1xxlA
Description:	The crystal structure of YcgJ protein from Bacillus subitilis at 2.1 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
oxidoreductase activity	0.964067575431689	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: