YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170684269, gi...
Organism:	Escherichia coli SMS-3-5
Length:	680 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170684269, gi....

Description	E-value	Query Range	Subject Range
gi\|28805052, gi\|... - gi\|28896844\|ref\|NP_796449.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633], gi\|28805052\|db... gi\|28805052 - gi\|28805052\|dbj\|BAC58333.1\| oligopeptidase A [Vibrio parahaemolyticus RIMD 2210633]	749.0	[0..1]	[680..1]
Q664F3\|Q664F3_YERPS - Oligopeptidase A - Yersinia pseudotuberculosis gi\|51598106, gi\|... - gi\|51598106\|ref\|YP_072297.1\| oligopeptidase A [Yersinia pseudotuberculosis IP 32953], gi\|51591388\|em...	748.0	[0..1]	[680..1]
gi\|91212991, gi\|... - gi\|91212991\|ref\|YP_542977.1\| oligopeptidase A [Escherichia coli UTI89], gi\|91074565\|gb\|ABE09446.1\| o...	747.0	[0..1]	[680..14]
gi\|165915120, gi... - gi\|89105112\|ref\|ZP_01177638.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pestis biovar Orienta... gi\|229691095, gi... - gi\|229841756\|ref\|ZP_04461912.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. India 195],... gi\|108781706, gi... - gi\|108809793\|ref\|YP_653709.1\| oligopeptidase A [Yersinia pestis Antiqua], gi\|108781706\|gb\|ABG15764.1... gi\|229696039, gi... - gi\|229839673\|ref\|ZP_04459832.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. PEXU2], gi\|... gi\|229678412, gi... - gi\|229904294\|ref\|ZP_04519405.1\| oligopeptidase A [Yersinia pestis Nepal516], gi\|229678412\|gb\|EEO7451... gi\|229706515, gi... - gi\|229836447\|ref\|ZP_04456614.1\| oligopeptidase A [Yersinia pestis Pestoides A], gi\|229706515\|gb\|EEO9... gi\|162353098, gi... - gi\|77635480\|ref\|ZP_00797564.1\| COG0339: Zn-dependent oligopeptidases [Yersinia pestis Angola], gi\|16... gi\|165926985, gi... - gi\|165926985\|ref\|ZP_02222817.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. F1991016], ... gi\|166009704, gi... - gi\|166009704\|ref\|ZP_02230602.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. E1979001], gi\|... gi\|166205336, gi... - gi\|166213395\|ref\|ZP_02239430.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. B42003004], gi... gi\|150261069, gi... - gi\|150261069\|ref\|ZP_01917797.1\| oligopeptidase A [Yersinia pestis CA88-4125], gi\|149290477\|gb\|EDM405... gi\|167400663, gi... - gi\|167400663\|ref\|ZP_02306172.1\| oligopeptidase A [Yersinia pestis biovar Antiqua str. UG05-0454], gi... gi\|167420890, gi... - gi\|167420890\|ref\|ZP_02312643.1\| oligopeptidase A [Yersinia pestis biovar Orientalis str. MG05-1020],... gi\|167426620, gi... - gi\|167426620\|ref\|ZP_02318373.1\| oligopeptidase A [Yersinia pestis biovar Mediaevalis str. K1973002],... gi\|145212287, gi... - gi\|145600591\|ref\|YP_001164667.1\| oligopeptidase A [Yersinia pestis Pestoides F], gi\|145212287\|gb\|ABP... gi\|21960848, gi\|... - gi\|22127726\|ref\|NP_671149.1\| oligopeptidase A [Yersinia pestis KIM], gi\|21960848\|gb\|AAM87400.1\|AE013... gi\|25319701 - pir\|\|AH0483 oligopeptidase A (EC 3.4.24.70) [imported] - Yersinia pestis (strain CO92) gi\|15981883, gi\|... - gi\|218930970\|ref\|YP_002348845.1\| oligopeptidase A [Yersinia pestis CO92], gi\|16124102\|ref\|NP_407415.... gi\|45443086, gi\|... - gi\|45443086\|ref\|NP_994625.1\| oligopeptidase A [Yersinia pestis biovar Microtus str. 91001], gi\|45437...	746.0	[0..1]	[680..1]
gi\|187730439, gi... - gi\|75179940\|ref\|ZP_00699927.1\| COG0339: Zn-dependent oligopeptidases [Shigella boydii BS512], gi\|187...	746.0	[0..1]	[680..1]
gi\|91224906, gi\|... - gi\|91224906\|ref\|ZP_01260165.1\| oligopeptidase A [Vibrio alginolyticus 12G01], gi\|91190152\|gb\|EAS7642...	746.0	[0..1]	[680..1]
gi\|30065219, gi\|... - gi\|30065219\|ref\|NP_839390.1\| oligopeptidase A [Shigella flexneri 2a str. 2457T], gi\|30043481\|gb\|AAP1... gi\|110616881, gi... - gi\|110807333\|ref\|YP_690853.1\| oligopeptidase A [Shigella flexneri 5 str. 8401], gi\|110616881\|gb\|ABF0... gi\|56383906, gi\|... - gi\|56480355\|ref\|NP_709278.2\| oligopeptidase A [Shigella flexneri 2a str. 301], gi\|56383906\|gb\|AAN449...	746.0	[0..1]	[680..1]
gi\|226902514, gi... - gi\|237703250\|ref\|ZP_04533731.1\| oligopeptidase A [Escherichia sp. 3_2_53FAA], gi\|226902514\|gb\|EEH887... gi\|215488770, gi... - gi\|215488770\|ref\|YP_002331201.1\| oligopeptidase A [Escherichia coli O127:H6 str. E2348/69], gi\|21526... gi\|218367336, gi... - gi\|218560567\|ref\|YP_002393480.1\| oligopeptidase A [Escherichia coli S88], gi\|218367336\|emb\|CAR05114.... gi\|218429341, gi... - gi\|218691777\|ref\|YP_002399989.1\| oligopeptidase A [Escherichia coli ED1a], gi\|218429341\|emb\|CAR10155... gi\|117625776, gi... - gi\|117625776\|ref\|YP_859099.1\| oligopeptidase A [Escherichia coli APEC O1], gi\|115514900\|gb\|ABJ02975....	746.0	[0..1]	[680..1]
gi\|75231653, gi\|... - gi\|75231653\|ref\|ZP_00718011.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli B7A], gi\|1911... gi\|218697204, gi... - gi\|218697204\|ref\|YP_002404871.1\| oligopeptidase A [Escherichia coli 55989], gi\|218353936\|emb\|CAV0037... gi\|194435751, gi... - gi\|83588644\|ref\|ZP_00927268.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli 101-1], gi\|19... gi\|218556046, gi... - gi\|218556046\|ref\|YP_002388959.1\| oligopeptidase A [Escherichia coli IAI1], gi\|218362814\|emb\|CAR00441... gi\|251786746, gi... - gi\|251786746\|ref\|YP_003001050.1\| hypothetical protein B21_03300 [Escherichia coli BL21], gi\|24237901... gi\|254163421, gi... - gi\|254163421\|ref\|YP_003046529.1\| oligopeptidase A [Escherichia coli B str. REL606], gi\|253975322\|gb\|... gi\|253322717, gi... - gi\|254290171\|ref\|YP_003055919.1\| oligopeptidase A [Escherichia coli BL21(DE3)], gi\|253979478\|gb\|ACT4... gi\|192958155, gi... - gi\|75237440\|ref\|ZP_00721473.1\| COG0339: Zn-dependent oligopeptidases [Escherichia coli E110019], gi\|...	745.0	[0..1]	[680..1]
gi\|209396642, gi... - gi\|209396642\|ref\|YP_002272964.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4115], gi\|2091580... gi\|217325564, gi... - gi\|217325564\|ref\|ZP_03441648.1\| oligopeptidase A [Escherichia coli O157:H7 str. TW14588], gi\|2173217... gi\|195935016 - gi\|195935016\|ref\|ZP_03080398.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4024] gi\|208808077, gi... - gi\|208808077\|ref\|ZP_03250414.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4206], gi\|20872787... gi\|208813633, gi... - gi\|208813633\|ref\|ZP_03254962.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4045], gi\|20873491... gi\|208739743, gi... - gi\|208819620\|ref\|ZP_03259940.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4042], gi\|20873974... gi\|168772565, gi... - gi\|187771638\|gb\|EDU35482.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4196], gi\|168772565\|re... gi\|168779626, gi... - gi\|189002260\|gb\|EDU71246.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4076], gi\|168779626\|re... gi\|189374592, gi... - gi\|189374592\|gb\|EDU93008.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC869], gi\|168785348\|ref... gi\|189379996, gi... - gi\|189379996\|gb\|EDU98412.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC508], gi\|168797313\|ref... gi\|168746980, gi... - gi\|188018294\|gb\|EDU56416.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4113], gi\|168746980\|re... gi\|189359131, gi... - gi\|189359131\|gb\|EDU77550.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4401], gi\|168753295\|re... gi\|13363844, gi\|... - gi\|15833624\|ref\|NP_312397.1\| oligopeptidase A [Escherichia coli O157:H7 str. Sakai], gi\|13363844\|dbj... gi\|189369485, gi... - gi\|189369485\|gb\|EDU87901.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4501], gi\|168759566\|re... gi\|168765890, gi... - gi\|189364810\|gb\|EDU83229.1\| oligopeptidase A [Escherichia coli O157:H7 str. EC4486], gi\|168765890\|re... gi\|13363844, gi\|... - gi\|15833624\|ref\|NP_312397.1\| oligopeptidase A [Escherichia coli O157:H7], gi\|13363844\|dbj\|BAB37793.1... gi\|254795441, gi... - gi\|254795441\|ref\|YP_003080278.1\| oligopeptidase A [Escherichia coli O157:H7 str. TW14359], gi\|254594... gi\|25319707, gi\|... - pir\|\|B91175 oligopeptidase A [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952)... gi\|15804033, gi\|... - gi\|15804033\|ref\|NP_290069.1\| oligopeptidase A [Escherichia coli O157:H7 EDL933], gi\|12518192\|gb\|AAG5...	745.0	[0..1]	[680..1]

Back

Predicted Domain #1

Region A:
Residues: [1-680]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNPLLTPFE LPPFSKILPE HVVPAVTKAL NDCRENVERV VAQGAPYTWE NLCQPLAEVD  60
   61 DVLGRIFSPV SHLNSVKNSP ELREAYEQTL PLLSEYSTWV GQHEGLYKAY RDLRDGDHYA 120
  121 TLNTAQKKAV DNALRDFELS GIGLPKEKQQ RYGEIATRLS ELGNQYSNNV LDATMGWTKL 180
  181 VTDEAELAGM PESALAAAKA QAEAKELEGY LLTLDIPSYL PVMTYCDNQA LREEMYRAYS 240
  241 TRASDQGPNA GKWDNSKVME EILALRHELA QLLGFENYAF KSLATKMAEN PQQVLDFLTD 300
  301 LAKRARPQGE KELAQLRAFA KAEFGVDELQ PWDIAYYSEK QKQHLYSISD EQLRPYFPEN 360
  361 KAVNGLFEVV KRIYGITAKE RKDVDVWHPD VRFFELYDEN NELRGSFYLD LYARENKRGG 420
  421 AWMDDCVGQM RKADGSLQKP VAYLTCNFNR PVNGKPALFT HDEVITLFHE FGHGLHHMLT 480
  481 RIETAGVSGI SGVPWDAVEL PSQFMENWCW EPEALAFISG HYETGEPLPK ELLDKMLAAK 540
  541 NYQAALFILR QLEFGLFDFR LHAEFRPDQG AKILETLAEI KKLVAVVPSP SWGRFPHAFS 600
  601 HIFAGGYAAG YYSYLWADVL AADAFSRFEE EGIFNRETGQ SFLDNILSRG GSEEPMDLFK 660
  661 RFRGREPQLD AMLEHYGIKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	156.0
Match:	2o36A
Description:	No description for 2o36A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits