YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165924377, gi...
Organism:	Yersinia pestis biovar Orientalis str. F1991016
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165924377, gi....

Description	E-value	Query Range	Subject Range
gi\|52348807, gi\|... - gi\|52786305\|ref\|YP_092134.1\| 6-phosphogluconate dehydrogenase [Bacillus licheniformis ATCC 14580], g...	0.0	[1..468]	[1..468]
gi\|77636293, gi\|... - gi\|77636293\|ref\|ZP_00798368.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia pestis Angola], g...	0.0	[1..469]	[1..469]
gi\|77975882, gi\|... - gi\|77975882\|ref\|ZP_00831416.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia frederiksenii ATC...	0.0	[1..468]	[1..468]
gi\|22126509, gi\|... - gi\|22126509\|ref\|NP_669932.1\| 6-phosphogluconate dehydrogenase [Yersinia pestis KIM], gi\|21959506\|gb\|...	0.0	[1..469]	[18..486]
gi\|108778746, gi... - gi\|108806833\|ref\|YP_650749.1\| 6-phosphogluconate dehydrogenase [Yersinia pestis Antiqua], gi\|1087787... gi\|167050152, gi... - gi\|167400203\|ref\|ZP_02305716.1\| 6-phosphogluconate dehydrogenase, decarboxylating [Yersinia pestis b...	0.0	[1..469]	[1..469]
gi\|221323828 - gi\|221323828\|ref\|ZP_03605122.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD_BACSU - 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating OS=Bacillus subtilis (strain 16... gi\|221319552 - gi\|221319552\|ref\|ZP_03600846.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... gi\|221314629 - gi\|221314629\|ref\|ZP_03596434.1\| 6-phosphogluconate dehydrogenase [Bacillus subtilis subsp. subtilis ... 6PGD2_BACSU - 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4	0.0	[1..468]	[1..468]
gi\|238720490, gi... - gi\|77962467\|ref\|ZP_00826287.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia mollaretii ATCC 4...	0.0	[1..468]	[1..468]
gi\|238784364, gi... - gi\|77959279\|ref\|ZP_00823300.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia bercovieri ATCC 4...	0.0	[1..468]	[1..468]
gi\|45441255, gi\|... - gi\|45441255\|ref\|NP_992794.1\| 6-phosphogluconate dehydrogenase [Yersinia pestis biovar Microtus str. ...	0.0	[1..469]	[18..486]
gi\|238727246, gi... - gi\|77978861\|ref\|ZP_00834285.1\| COG0362: 6-phosphogluconate dehydrogenase [Yersinia intermedia ATCC 2...	0.0	[1..468]	[1..468]

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Predicted Domain #1

Region A:
Residues: [1-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQQIGVVG MAVMGRNLAL NIESRGYSVS IFNRSSDKTD EVVAENPGKN LVPSYTVEEF  60
   61 VDSLEKPRRI LLMVKAGEAT DKTIASLTPH LDKGDILIDG GNTYYKDTIR RNRELSAQGF 120
  121 NFIGTGVSGG EEGALKGPSI MPGGQKEAYE LVAPILEKIA ARADDGDACV AYIGADGAGH 180
  181 YVKMVHNGIE YGDMQLIAEA YSLLKQSLGL SNEELASTFA EWNKGELNSY LIDITKDIFT 240
  241 KKDEDGNYLV DVILDEAANK GTGKWTSQSS LDLGEPLTLI TESVFARYLS SLKDQRVAAS 300
  301 KVLTGPKVQP FTGDKAEFIE KIRRALYLGK IVSYAQGFSQ LKAASNENNW DLNYGEIAKI 360
  361 FRAGCIIRAQ FLQKITDAYA ENADIANLLL APYFKQIADE YQQALRDVVS YAVQNGIPTP 420
  421 TFSAAINYYD SYRSAVLPAN LIQAQRDYFG AHTYKRTDKE GVFHTEWMA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.0
Match:	2iyoA
Description:	No description for 2iyoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits