YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218432357, gi...
Organism:	Escherichia coli UMN026
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218432357, gi....

Description	E-value	Query Range	Subject Range
gi\|75177308, gi\|... - gi\|75177308\|ref\|ZP_00697397.1\| COG0709: Selenophosphate synthase [Shigella boydii BS512], gi\|1877323...	326.0	[0..1]	[347..1]
gi\|227837381, gi... - gi\|227885808\|ref\|ZP_04003613.1\| selenide, water dikinase [Escherichia coli 83972], gi\|227837381\|gb\|E... gi\|26248021, gi\|... - gi\|26248021\|ref\|NP_754061.1\| selenophosphate synthetase [Escherichia coli CFT073], gi\|26108424\|gb\|AA...	326.0	[0..1]	[347..3]
gi\|209768404, gi... - gi\|25314245\|pir\|\|B85786 selenophosphate synthase [imported] - Escherichia coli (strain O157:H7, sub... gi\|15802175, gi\|... - gi\|15802175\|ref\|NP_288197.1\| selenophosphate synthetase [Escherichia coli O157:H7 EDL933], gi\|125157... gi\|208816588, gi... - gi\|208816588\|ref\|ZP_03257708.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208810381, gi... - gi\|208810381\|ref\|ZP_03252257.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|209158060, gi... - gi\|209396660\|ref\|YP_002270835.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4115], gi... gi\|208820701, gi... - gi\|208820701\|ref\|ZP_03261021.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|218699671, gi... - gi\|218699671\|ref\|YP_002407300.1\| selenophosphate synthetase [Escherichia coli IAI39], gi\|218369657\|e... gi\|217318196, gi... - gi\|217328849\|ref\|ZP_03444930.1\| selenide, water dikinase [Escherichia coli O157:H7 str. TW14588], gi... gi\|254793382, gi... - gi\|254793382\|ref\|YP_003078219.1\| selenophosphate synthase [Escherichia coli O157:H7 str. TW14359], g... SELD_ECO57 - Selenide, water dikinase OS=Escherichia coli O157:H7 GN=selD PE=3 SV=1 SELD_ECOL6 - Selenide, water dikinase OS=Escherichia coli O6 GN=selD PE=3 SV=1 SELD_ECOL6 - Selenide, water dikinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=selD PE=3... gi\|191171771, gi... - gi\|75241361\|ref\|ZP_00725212.1\| COG0709: Selenophosphate synthase [Escherichia coli F11], gi\|19117177... SELD_SHIDS - Selenide, water dikinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=selD PE=3 SV=1 SELD_SHIBS - Selenide, water dikinase OS=Shigella boydii serotype 4 (strain Sb227) GN=selD PE=3 SV=1 gi\|189356151, gi... - gi\|189356151\|gb\|EDU74570.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|168749415, gi... - gi\|188016283\|gb\|EDU54405.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168770727, gi... - gi\|189360379\|gb\|EDU78798.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|189367434, gi... - gi\|189367434\|gb\|EDU85850.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168782186, gi... - gi\|189000334\|gb\|EDU69320.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|187769373, gi... - gi\|187769373\|gb\|EDU33217.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|15831724, gi\|... - gi\|15831724\|ref\|NP_310497.1\| selenophosphate synthetase [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|195937450 - gi\|195937450\|ref\|ZP_03082832.1\| selenophosphate synthetase [Escherichia coli O157:H7 str. EC4024] SELD_ECOL5 - Selenide, water dikinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=selD PE=3 SV=1 gi\|189372046, gi... - gi\|189372046\|gb\|EDU90462.1\| selenide, water dikinase [Escherichia coli O157:H7 str. EC869], gi\|16878...	326.0	[0..1]	[347..1]
gi\|117623935, gi... - gi\|117623935\|ref\|YP_852848.1\| selenophosphate synthetase [Escherichia coli APEC O1], gi\|115513059\|gb... gi\|91210980, gi\|... - gi\|91210980\|ref\|YP_540966.1\| selenophosphate synthetase [Escherichia coli UTI89], gi\|91072554\|gb\|ABE... gi\|226900471, gi... - gi\|237705714\|ref\|ZP_04536195.1\| selenophosphate synthetase [Escherichia sp. 3_2_53FAA], gi\|226900471...	326.0	[0..1]	[347..3]
gi\|83569629 - gi\|83569629\|ref\|ZP_00921080.1\| COG0709: Selenophosphate synthase [Shigella dysenteriae 1012]	325.0	[0..1]	[347..1]
gi\|218361098, gi... - gi\|218554330\|ref\|YP_002387243.1\| selenophosphate synthetase [Escherichia coli IAI1], gi\|218361098\|em... gi\|218695321, gi... - gi\|218695321\|ref\|YP_002402988.1\| selenophosphate synthetase [Escherichia coli 55989], gi\|218352053\|e... gi\|193065815, gi... - gi\|75256164\|ref\|ZP_00727860.1\| COG0709: Selenophosphate synthase [Escherichia coli E22], gi\|19306581... gi\|75236769, gi\|... - gi\|75236769\|ref\|ZP_00720840.1\| COG0709: Selenophosphate synthase [Escherichia coli E110019], gi\|1930... gi\|190900925, gi... - gi\|75227679\|ref\|ZP_00714418.1\| COG0709: Selenophosphate synthase [Escherichia coli B7A], gi\|19116904... gi\|75210249, gi\|... - gi\|75210249\|ref\|ZP_00710417.1\| COG0709: Selenophosphate synthase [Escherichia coli B171], gi\|1944285... SELD_ECO24 - Selenide, water dikinase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=selD PE=3 SV=1 gi\|209919126, gi... - gi\|209919126\|ref\|YP_002293210.1\| selenophosphate synthetase [Escherichia coli SE11], gi\|209912385\|db...	325.0	[0..1]	[347..1]
gi\|194438575, gi... - gi\|83586061\|ref\|ZP_00924699.1\| COG0709: Selenophosphate synthase [Escherichia coli 101-1], gi\|194438... gi\|242377485, gi... - gi\|251785212\|ref\|YP_002999516.1\| hypothetical protein B21_01721 [Escherichia coli BL21], gi\|24237748... gi\|254161822, gi... - gi\|254161822\|ref\|YP_003044930.1\| selenophosphate synthetase [Escherichia coli B str. REL606], gi\|253... gi\|254288610, gi... - gi\|254288610\|ref\|YP_003054358.1\| selenophosphate synthetase [Escherichia coli BL21(DE3)], gi\|2539779...	324.0	[0..1]	[347..1]
SELD_SHIFL - Selenide, water dikinase OS=Shigella flexneri GN=selD PE=3 SV=1 gi\|56479903, gi\|... - gi\|56479903\|ref\|NP_707349.2\| selenophosphate synthetase [Shigella flexneri 2a str. 301], gi\|56383454... SELD_SHIF8 - Selenide, water dikinase OS=Shigella flexneri serotype 5b (strain 8401) GN=selD PE=3 SV=1 gi\|30041222, gi\|... - gi\|30062973\|ref\|NP_837144.1\| selenophosphate synthetase [Shigella flexneri 2a str. 2457T], gi\|300412...	324.0	[0..1]	[347..1]
SELD_SHISS - Selenide, water dikinase OS=Shigella sonnei (strain Ss046) GN=selD PE=3 SV=1	323.0	[0..1]	[347..1]
gi\|170024323, gi... - gi\|170024323\|ref\|YP_001720828.1\| selenophosphate synthetase [Yersinia pseudotuberculosis YPIII], gi\|... SELD_YERPS - Selenide, water dikinase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=selD PE=3 SV=... gi\|186895461, gi... - gi\|186895461\|ref\|YP_001872573.1\| selenophosphate synthetase [Yersinia pseudotuberculosis PB1/+], gi\|... SELD_YERPS - Selenide, water dikinase OS=Yersinia pseudotuberculosis GN=selD PE=3 SV=1 gi\|117673601, gi... - gi\|77629173\|ref\|ZP_00791759.1\| COG0709: Selenophosphate synthase [Yersinia pseudotuberculosis IP 317...	318.0	[0..1]	[346..1]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENSIRLTQ YSHGAGCGCK ISPKVLETIL HSEQAKFVDP NLLVGNETRD DAAVYDLGNG  60
   61 TSVISTTDFF MPIVDNPFDF GRIAATNAIS DIFAMGGKPI MAIAILGWPI NKLSPEIARE 120
  121 VTEGGRYACR QAGIALAGGH SIDAPEPIFG LAVTGIVPTE RVKKNSTAQA GCKLFLTKPL 180
  181 GIGVLTTAEK KSLLKPEHQG LATEVMCRMN IAGASFANIE GVKAMTDVTG FGLLGHLSEM 240
  241 CQGAGVQARV DYEAIPKLPG VEEYIKLGAV PGGTERNFAS YGHLMGEMPR EVRDLLCDPQ 300
  301 TSGGLLLAVM PEAENEVKAT AAEFGIELTA IGELVPARGG RAMVEIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.221849
Match:	1cliA
Description:	Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain; Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity	5.304819659701	bayes_pls_golite062009
catalytic activity	2.79790866787115	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.73675973243599	bayes_pls_golite062009
phosphoribosylformylglycinamidine cyclo-ligase activity	0.42057432438924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: