YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166008669, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166008669, gi....

Description	E-value	Query Range	Subject Range
gi\|77976168, gi\|... - gi\|77976168\|ref\|ZP_00831701.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia fred...	1.0E-73	[1..155]	[1..155]
gi\|238725652, gi... - gi\|77976938\|ref\|ZP_00832403.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia inte...	9.0E-73	[1..155]	[1..155]
gi\|238718666, gi... - gi\|77961951\|ref\|ZP_00825779.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia moll...	5.0E-70	[1..155]	[1..152]
gi\|77959726 - gi\|77959726\|ref\|ZP_00823743.1\| COG3045: Uncharacterized protein conserved in bacteria [Yersinia berc...	8.0E-67	[14..155]	[1..142]
CREA_ECOLI - Protein creA - Escherichia coli EG11217 - putative periplasmic protein / Predicted periplasmic protein, function unknown CREA_SHIFL - Protein CreA OS=Shigella flexneri GN=creA PE=3 SV=1 gi\|24115625, gi\|... - gi\|24115625\|ref\|NP_710135.1\| hypothetical protein SF4429 [Shigella flexneri 2a str. 301], gi\|2405496... CREA_ECOL6 - Protein CreA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=creA PE=3 SV=1 gi\|30043897, gi\|... - gi\|30065633\|ref\|NP_839804.1\| hypothetical protein S4700 [Shigella flexneri 2a str. 2457T], gi\|300438... gi\|227837940, gi... - gi\|227885111\|ref\|ZP_04002916.1\| creA protein [Escherichia coli 83972], gi\|227837940\|gb\|EEJ48406.1\| c... CREA_ECO57 - Protein CreA OS=Escherichia coli O157:H7 GN=creA PE=3 SV=1 gi\|226902045, gi... - gi\|237704133\|ref\|ZP_04534614.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... EG11217 - putative periplasmic protein / Predicted periplasmic protein, function unknown gi\|12519429, gi\|... - gi\|15804968\|ref\|NP_291010.1\| hypothetical protein Z6000 [Escherichia coli O157:H7 EDL933], gi\|125194... gi\|253980383, gi... - gi\|254291074\|ref\|YP_003056824.1\| hypothetical protein ECD_04273 [Escherichia coli BL21(DE3)], gi\|253... gi\|226840515, gi... - gi\|254037409\|ref\|ZP_04871486.1\| creA protein [Escherichia sp. 1_1_43], gi\|226840515\|gb\|EEH72517.1\| c... gi\|238903484, gi... - gi\|238903484\|ref\|YP_002929280.1\| hypothetical protein BWG_4089 [Escherichia coli BW2952], gi\|2388605... gi\|251787645, gi... - gi\|251787645\|ref\|YP_003001949.1\| hypothetical protein B21_04238 [Escherichia coli BL21], gi\|24237991... gi\|215489710, gi... - gi\|215489710\|ref\|YP_002332141.1\| hypothetical protein E2348C_4697 [Escherichia coli O127:H6 str. E23... gi\|217324583, gi... - gi\|217324583\|ref\|ZP_03440667.1\| creA protein [Escherichia coli O157:H7 str. TW14588], gi\|217320804\|g... gi\|218556933, gi... - gi\|218556933\|ref\|YP_002389847.1\| hypothetical protein ECIAI1_4622 [Escherichia coli IAI1], gi\|218363... gi\|218368399, gi... - gi\|218561630\|ref\|YP_002394543.1\| hypothetical protein ECS88_5080 [Escherichia coli S88], gi\|21836839... gi\|208734744, gi... - gi\|208813467\|ref\|ZP_03254796.1\| creA protein [Escherichia coli O157:H7 str. EC4045], gi\|208734744\|gb... gi\|208741020, gi... - gi\|208820897\|ref\|ZP_03261217.1\| creA protein [Escherichia coli O157:H7 str. EC4042], gi\|208741020\|gb... gi\|209160668, gi... - gi\|209399268\|ref\|YP_002273918.1\| creA protein [Escherichia coli O157:H7 str. EC4115], gi\|209160668\|g... gi\|209921864, gi... - gi\|209921864\|ref\|YP_002295948.1\| hypothetical protein ECSE_4673 [Escherichia coli SE11], gi\|20991512... gi\|194412805, gi... - gi\|194429190\|ref\|ZP_03061719.1\| creA protein [Escherichia coli B171], gi\|194412805\|gb\|EDX29098.1\| cr... gi\|194439270, gi... - gi\|194439270\|ref\|ZP_03071349.1\| creA protein [Escherichia coli 101-1], gi\|194421752\|gb\|EDX37760.1\| c... gi\|195937668 - gi\|195937668\|ref\|ZP_03083050.1\| hypothetical protein EscherichcoliO157_14672 [Escherichia coli O157:... gi\|208725442, gi... - gi\|208805641\|ref\|ZP_03247978.1\| creA protein [Escherichia coli O157:H7 str. EC4206], gi\|208725442\|gb... gi\|190902562, gi... - gi\|191167422\|ref\|ZP_03029237.1\| creA protein [Escherichia coli B7A], gi\|190902562\|gb\|EDV62296.1\| cre... gi\|191173197, gi... - gi\|191173197\|ref\|ZP_03034729.1\| creA protein [Escherichia coli F11], gi\|190906582\|gb\|EDV66189.1\| cre... gi\|192926704, gi... - gi\|193065631\|ref\|ZP_03046697.1\| creA protein [Escherichia coli E22], gi\|192926704\|gb\|EDV81332.1\| cre... gi\|193070598, gi... - gi\|193070598\|ref\|ZP_03051536.1\| creA protein [Escherichia coli E110019], gi\|192956081\|gb\|EDV86546.1\|... CREA_ECOL6 - Protein CreA OS=Escherichia coli O6 GN=creA PE=4 SV=1 gi\|218430351, gi... - gi\|218692787\|ref\|YP_002400999.1\| hypothetical protein ECED1_5270 [Escherichia coli ED1a], gi\|2184303... gi\|218698233, gi... - gi\|218698233\|ref\|YP_002405900.1\| hypothetical protein EC55989_5059 [Escherichia coli 55989], gi\|2183... gi\|218373132, gi... - gi\|218703146\|ref\|YP_002410775.1\| hypothetical protein ECIAI39_4930 [Escherichia coli IAI39], gi\|2183... gi\|218708082, gi... - gi\|218708082\|ref\|YP_002415601.1\| hypothetical protein ECUMN_5028 [Escherichia coli UMN026], gi\|21843... gi\|91214115, gi\|... - gi\|91214115\|ref\|YP_544101.1\| hypothetical protein UTI89_C5170 [Escherichia coli UTI89], gi\|91075689\|... gi\|254164323, gi... - gi\|254164323\|ref\|YP_003047433.1\| hypothetical protein ECB_04273 [Escherichia coli B str. REL606], gi... gi\|15834609, gi\|... - gi\|15834609\|ref\|NP_313382.1\| hypothetical protein ECs5355 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254796393, gi... - gi\|254796393\|ref\|YP_003081230.1\| hypothetical protein ECSP_5480 [Escherichia coli O157:H7 str. TW143... gi\|124499256, gi... - gi\|124530365\|ref\|ZP_01701051.1\| CreA family protein [Escherichia coli B], gi\|124499256\|gb\|EAY46748.1... gi\|115515881, gi... - gi\|117626757\|ref\|YP_860080.1\| hypothetical protein APECO1_1982 [Escherichia coli APEC O1], gi\|115515... gi\|110644836, gi... - gi\|110644836\|ref\|YP_672566.1\| hypothetical protein ECP_4783 [Escherichia coli 536], gi\|110346428\|gb\|... gi\|110808185, gi... - gi\|110808185\|ref\|YP_691705.1\| hypothetical protein SFV_4431 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|157163845, gi... - gi\|157163845\|ref\|YP_001461163.1\| hypothetical protein EcHS_A4633 [Escherichia coli HS], gi\|157069525... gi\|157081400, gi... - gi\|157159370\|ref\|YP_001465918.1\| hypothetical protein EcE24377A_4996 [Escherichia coli E24377A], gi\|... gi\|81243797, gi\|... - gi\|82779649\|ref\|YP_405998.1\| hypothetical protein SDY_4658 [Shigella dysenteriae Sd197], gi\|81243797... gi\|170083783, gi... - gi\|170083783\|ref\|YP_001733103.1\| hypothetical protein ECDH10B_4555 [Escherichia coli str. K-12 subst... gi\|82546748, gi\|... - gi\|82546748\|ref\|YP_410695.1\| hypothetical protein SBO_4460 [Shigella boydii Sb227], gi\|81248159\|gb\|A... gi\|170682862, gi... - gi\|170682862\|ref\|YP_001746855.1\| creA protein [Escherichia coli SMS-3-5], gi\|170520580\|gb\|ACB18758.1... gi\|187428944, gi... - gi\|187731952\|ref\|YP_001883061.1\| creA protein [Shigella boydii CDC 3083-94], gi\|187428944\|gb\|ACD0821... gi\|74314831, gi\|... - gi\|74314831\|ref\|YP_313250.1\| hypothetical protein SSON_4547 [Shigella sonnei Ss046], gi\|73858308\|gb\|... gi\|188491472, gi... - gi\|188496273\|ref\|ZP_03003543.1\| creA protein [Escherichia coli 53638], gi\|188491472\|gb\|EDU66575.1\| c... gi\|189000662, gi... - gi\|189000662\|gb\|EDU69648.1\| creA protein [Escherichia coli O157:H7 str. EC4076], gi\|168781689\|ref\|ZP... gi\|168785042, gi... - gi\|189375035\|gb\|EDU93451.1\| creA protein [Escherichia coli O157:H7 str. EC869], gi\|168785042\|ref\|ZP_... gi\|89111105, gi\|... - gi\|89111105\|ref\|AP_004885.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|189379488, gi... - gi\|189379488\|gb\|EDU97904.1\| creA protein [Escherichia coli O157:H7 str. EC508], gi\|168797972\|ref\|ZP_... gi\|169756571, gi... - gi\|170021643\|ref\|YP_001726597.1\| hypothetical protein EcolC_3659 [Escherichia coli ATCC 8739], gi\|16... gi\|168756817, gi... - gi\|189356039\|gb\|EDU74458.1\| creA protein [Escherichia coli O157:H7 str. EC4401], gi\|168756817\|ref\|ZP... gi\|189366957, gi... - gi\|189366957\|gb\|EDU85373.1\| creA protein [Escherichia coli O157:H7 str. EC4501], gi\|168762751\|ref\|ZP... gi\|189364111, gi... - gi\|189364111\|gb\|EDU82530.1\| creA protein [Escherichia coli O157:H7 str. EC4486], gi\|168766681\|ref\|ZP... gi\|168776623, gi... - gi\|187768000\|gb\|EDU31844.1\| creA protein [Escherichia coli O157:H7 str. EC4196], gi\|168776623\|ref\|ZP... gi\|168750964, gi... - gi\|188014935\|gb\|EDU53057.1\| creA protein [Escherichia coli O157:H7 str. EC4113], gi\|168750964\|ref\|ZP...	2.0E-65	[19..155]	[19..155]
gi\|75256308 - gi\|75256308\|ref\|ZP_00727980.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75239539 - gi\|75239539\|ref\|ZP_00723509.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75234559 - gi\|75234559\|ref\|ZP_00718900.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75229456 - gi\|75229456\|ref\|ZP_00716006.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75209600 - gi\|75209600\|ref\|ZP_00709818.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75198211 - gi\|75198211\|ref\|ZP_00708281.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189105 - gi\|75189105\|ref\|ZP_00702372.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75176002 - gi\|75176002\|ref\|ZP_00696181.1\| COG3045: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|83585304 - gi\|83585304\|ref\|ZP_00923952.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75515588 - gi\|75515588\|ref\|ZP_00737745.1\| COG3045: Uncharacterized protein conserved in bacteria [Escherichia c...	3.0E-65	[14..155]	[1..142]
gi\|56416357, gi\|... - gi\|56416357\|ref\|YP_153432.1\| hypothetical protein SPA4397 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=creA] [protein=hypothetical protein] [protein_id=YP_005240932.1] [location=4856580..4857053] gi\|16767828, gi\|... - gi\|16767828\|ref\|NP_463443.1\| hypothetical protein STM4587 [Salmonella typhimurium LT2], gi\|16423154\|... gi\|205323090, gi... - gi\|205357198\|ref\|ZP_02345942.2\| protein CreA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|25301065, gi\|... - gi\|25301065\|pir\|\|AC1075 conserved hypothetical protein creA [imported] - Salmonella enterica subsp. ... gi\|205348856, gi... - gi\|205360560\|ref\|ZP_02684331.2\| protein CreA [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|16763377 - gi\|16763377\|ref\|NP_458994.1\| hypothetical protein STY4934 [Salmonella enterica subsp. enterica serov... gi\|206711511, gi... - gi\|207859708\|ref\|YP_002246359.1\| hypothetical protein SEN4343 [Salmonella enterica subsp. enterica s... gi\|29144855, gi\|... - gi\|29144855\|ref\|NP_808197.1\| hypothetical protein t4626 [Salmonella enterica subsp. enterica serovar... gi\|194443788, gi... - gi\|194443788\|ref\|YP_002043829.1\| protein CreA [Salmonella enterica subsp. enterica serovar Newport s... gi\|197248469, gi... - gi\|197248469\|ref\|YP_002149530.1\| creA protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197096756, gi... - gi\|197365279\|ref\|YP_002144916.1\| hypothetical protein SSPA4082 [Salmonella enterica subsp. enterica ... gi\|205355301, gi... - gi\|205355301\|ref\|YP_002229102.1\| hypothetical protein SG4409 [Salmonella enterica subsp. enterica se...	7.0E-65	[18..155]	[18..155]
gi\|24982088, gi\|... - gi\|26987428\|ref\|NP_742853.1\| CreA family protein [Pseudomonas putida KT2440], gi\|24982088\|gb\|AAN6631... tr\|E4RHM5\|E4RHM5... - CreA OS=Pseudomonas putida (strain BIRD-1) GN=creA PE=4 SV=1	2.0E-64	[1..155]	[4..151]
gi\|62130635, gi\|... - gi\|62183002\|ref\|YP_219419.1\| hypothetical protein SC4432 [Salmonella enterica subsp. enterica serova...	2.0E-64	[18..155]	[18..155]
gi\|82713649, gi\|... - gi\|82739295\|ref\|ZP_00902103.1\| creA protein [Pseudomonas putida F1], gi\|82713649\|gb\|EAP48755.1\| creA...	2.0E-64	[1..155]	[4..151]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSWIFLGC LLSLGAITAQ AEEIGSVDTV FKLLGPDHKI VIEAFDDPDV KNVTCYISRA  60
   61 KTGGIKGGLG LAEDTADAAI SCQQVGPIEL SDKIKNKKSE GAVVFQKRTS LVFKKLQVVR 120
  121 FYDPKRNSLV YLTYSDRIVD GSPKNAISAV PIMPW

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.119186
Match:	PF05981.3
Description:	No description for PF05981.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits