YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195576680, gi...
Organism:	Drosophila simulans
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195576680, gi....

Description	E-value	Query Range	Subject Range
gi\|88943485 - gi\|88943485\|ref\|XP_497711.2\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Homo sapiens]	243.0	[0..1]	[136..45]
gi\|76612880 - gi\|76612880\|ref\|XP_871849.1\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Bos taurus]	236.0	[0..1]	[136..207]
gi\|50728592 - gi\|50728592\|ref\|XP_416193.1\| PREDICTED: similar to histone protein Hist2h3c1 [Gallus gallus]	234.0	[0..1]	[136..621]
gi\|74003971, gi\|... - gi\|74003975\|ref\|XP_859248.1\| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis fami...	230.0	[0..1]	[136..1]
gi\|148706930, gi... - gi\|62739244\|gb\|AAH94041.1\| Histone cluster 2, H3c1 [Mus musculus], gi\|30061401\|ref\|NP_835734.1\| hist...	228.0	[0..1]	[136..46]

Back

Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTKQTARK STGGKAPRKQ LATKAARKSA PSTGGVKKPH RYRPGTVALR EIRRYQKSTE  60
   61 LLIRKLPFQR LVREIAQDFK TDLRFQSAAI GALQEASEAY LVGLFEDTNL CAIHAKRVTI 120
  121 MPKDIQLARR IRGERA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.69897
Match:	1u35A
Description:	Crystal structure of the nucleosome core particle containing the histone domain of macroH2A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits