YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167401064, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	639 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167401064, gi....

Description	E-value	Query Range	Subject Range
Q66B41\|Q66B41_YERPS - High-affinity Fe2+/Pb2+ permease precursor - Yersinia pseudotuberculosis gi\|169751015, gi... - gi\|170024481\|ref\|YP_001720986.1\| iron permease FTR1 [Yersinia pseudotuberculosis YPIII], gi\|16975101... gi\|51589547, gi\|... - gi\|51596265\|ref\|YP_070456.1\| high-affinity Fe2+/Pb2+ permease [Yersinia pseudotuberculosis IP 32953]... gi\|186895299, gi... - gi\|186895299\|ref\|YP_001872411.1\| iron permease FTR1 [Yersinia pseudotuberculosis PB1/+], gi\|18669832...	0.0	[1..639]	[1..639]
gi\|77973240, gi\|... - gi\|77973240\|ref\|ZP_00828790.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia frederiksenii ATC...	0.0	[1..635]	[1..640]
gi\|77963670 - gi\|77963670\|ref\|ZP_00827478.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia mollaretii ATCC 4...	0.0	[23..635]	[4..621]
gi\|12720708, gi\|... - gi\|15602318\|ref\|NP_245390.1\| hypothetical protein PM0453 [Pasteurella multocida subsp. multocida str...	0.0	[8..637]	[9..633]
gi\|49610971, gi\|... - gi\|50120445\|ref\|YP_049612.1\| putative iron permease [Pectobacterium atrosepticum SCRI1043], gi\|49610...	0.0	[1..634]	[1..631]
gi\|238792495, gi... - gi\|77979828\|ref\|ZP_00835244.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia intermedia ATCC 2...	0.0	[26..637]	[2..618]
gi\|62550856 - gi\|62550856\|emb\|CAH64779.1\| hypothetical protein [uncultured bacterium] gi\|187736879 - gi\|187736879\|ref\|YP_001816617.1\| hypothetical protein IPF_129 [Escherichia coli 1520] gi\|218349995, gi... - gi\|218692832\|ref\|YP_002405944.1\| putative outer membrane protein,putative Iron permease FTR1 family ... gi\|172051461 - gi\|172051461\|emb\|CAP07803.1\| unnamed protein product [Escherichia coli] gi\|194337985 - gi\|194337985\|emb\|CAQ51397.1\| hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi...	0.0	[2..634]	[4..637]
gi\|238715806, gi... - gi\|77959435\|ref\|ZP_00823455.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Yersinia bercovieri ATCC 4...	0.0	[26..638]	[2..616]
gi\|91206255, gi\|... - gi\|91206255\|ref\|YP_538609.1\| hypothetical protein UTI89_P010 [Escherichia coli UTI89], gi\|91075706\|g... gi\|237702580, gi... - gi\|237702580\|ref\|ZP_04533061.1\| high-affinity Fe2+/Pb2+ permease [Escherichia sp. 3_2_53FAA], gi\|226... gi\|75238423 - gi\|75238423\|ref\|ZP_00722420.1\| COG0672: High-affinity Fe2+/Pb2+ permease [Escherichia coli F11]	0.0	[23..634]	[5..617]
gi\|150841044, gi... - gi\|75431123\|ref\|ZP_00732950.1\| conserved hypothetical [Actinobacillus succinogenes 130Z], gi\|7427638...	0.0	[1..636]	[1..629]

Back

Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIWQKFLLL FCCWVLSGPL VWASTDYSLW VNDIQSRLDK TAQLYQQQKT DEARAMVQMA  60
   61 YFEVFENLEG PIRINISAQK SFQMEAAFGE IRRMIGEGKS QADVDNKINW LKGELTGVLP 120
  121 VLVDGHKLTA EQQHAAYENS DIAVYWQQSF RIIDDLLAQA ISEYQDGKYA EASKSVQQAH 180
  181 YQGFKNSEME MSVRGNRSAQ QAAEINQQFT ALIDLARQPD KMTEVAYRVT GLLHTIEDIL 240
  241 PGLPTTREQQ QITVDQPISS DAIPDTQANA DWAQVSSKIN QAVTEAIGQY QQGKITPAMM 300
  301 AVQDAYFDLF EASGMENKVG SRDAAFKSTL EGHFTRLVGL MKAEKPVEQL QAEAVALQKD 360
  361 LVNAAEMLGD GG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [373-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETDWSLFVYS LLIIVREGLE ALLIVAAIVA YLVKNNHQDK LPLIRQSVVV ALIASVLTAF  60
   61 IFQWLFANSG QSRELLEGFT MMIAVV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [459-639]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSMSYWLL SKAEARNWKA YLEGKFAKSL SSGSIIGLWL TSFLAVYREG AETVLFYLAL  60
   61 IGDANTTSGH LSVLAGFGVG CVILLVAYLV MRFTVVKLPL KPFFIFTGGF MYLMAFVFAG 120
  121 KSVLELIEGK LFEPTLLPGV PEISWLGIYP YVETLIPQGV LLIAALVALW VMQWRSRTVH 180
  181 R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits