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View Structure Prediction Details

Protein: LEPA_PSEA8
Organism: Pseudomonas aeruginosa LESB58
Length: 599 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEPA_PSEA8.

Description E-value Query
Range		 Subject
Range
LEPA_PSEA7 - Elongation factor 4 OS=Pseudomonas aeruginosa (strain PA7) GN=lepA PE=3 SV=1
 0.0 [1..599] [1..599]
gi|70728451, gi|... - gi|70728451|ref|YP_258200.1| GTP-binding protein LepA [Pseudomonas fluorescens Pf-5], gi|68342750|gb...
 0.0 [2..599] [27..624]
LEPA_MAGSA - Elongation factor 4 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=lepA PE=3 SV=1
 0.0 [1..597] [1..597]
gi|67153333 - gi|67153333|ref|ZP_00415078.1| Small GTP-binding protein domain:GTP-binding protein LepA [Azotobacte...
LEPA_AZOVD - Elongation factor 4 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=lepA PE=3 SV=1
 0.0 [1..599] [1..599]
LEPA_PSEE4 - Elongation factor 4 OS=Pseudomonas entomophila (strain L48) GN=lepA PE=3 SV=1
gi|95112252 - gi|95112252|emb|CAK16979.1| GTP-binding protein LepA [Pseudomonas entomophila L48]
 0.0 [1..599] [1..599]
LEPA_PSEPK - Elongation factor 4 OS=Pseudomonas putida (strain KT2440) GN=lepA PE=3 SV=1
tr|E4RHD7|E4RHD7... - Elongation factor 4 OS=Pseudomonas putida (strain BIRD-1) GN=lepA PE=3 SV=1
 0.0 [1..599] [1..599]
LEPA_PSEPF - Elongation factor 4 OS=Pseudomonas fluorescens (strain Pf0-1) GN=lepA PE=3 SV=1
 0.0 [1..598] [1..598]
LEPA_PSEU2 - Elongation factor 4 OS=Pseudomonas syringae pv. syringae (strain B728a) GN=lepA PE=3 SV=1
 0.0 [1..598] [1..598]
LEPA_ALKEH - Elongation factor 4 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=lepA...
 0.0 [4..599] [29..624]

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Predicted Domain #1
Region A:
Residues: [1-520] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLSHIRNF SIIAHIDHGK STLADRFIQM CGGLSDREME AQVLDSMDLE RERGITIKAH  60
   61 SVTLHYKAQD GKTYQLNFID TPGHVDFTYE VSRSLAACEG ALLVVDAGQG VEAQSVANCY 120
  121 TAIEQGLEVM PVLNKMDLPQ AEPERVKEEI ESIIGIDATD AVACSAKSGM GVLEVLERLV 180
  181 TAIPAPEGEI EAPLQALIID SWFDNYLGVV SLVRVKNGRV KKGDKILVKS TGKVHQVDSV 240
  241 GVFTPKHTET VDLKAGEVGF IIAGIKDIHG APVGDTLTLN NTPDVEVLPG FKRVKPQVYA 300
  301 GLFPVSSDDF EDFRDALQKL TLNDSSLQYE PESSEALGFG FRCGFLGMLH MEIIQERLER 360
  361 EYDLDLITTA PTVVFEIVQK NGEIIYVDNP SKLPDLASIQ EMREPICRAT ILVPKDHLGN 420
  421 VITLCIEKRG VQRDMHFLSG QVQVVYDLPM NEVVLDFFDR LKSTSRGYAS LDYSFDRFEP 480
  481 SNLVRLDVLI NGEKVDALAL IVHRDNAPYK GRQLVEKMKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.69897
Match: 1fnmA
Description: Elongation factor G (EF-G), domain II; Elongation factor G (EF-G), N-terminal (G) domain; Elongation factor G (EF-G), domain IV; Elongation factor G (EF-G)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [521-599] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LIPRQMFDVA IQAAIGGQII ARSTVKALRK NVLAKCYGGD VSRKRKLLEK QKAGKKRMKQ  60
   61 VGSVEIPQEA FLAVLKVDS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 46.638272
Match: PF06421.3
Description: No description for PF06421.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score		 GO
Score		 GO
Term		 SCOP
Match		 SCOP Description
View Download 0.824 N/A N/A a.112.1 Description not found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle