YRC Public Data Repository - Protein Structure Prediction

Protein:	CX172_ARATH
Organism:	Arabidopsis thaliana
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CX172_ARATH.

Description	E-value	Query Range	Subject Range
gi\|88010824 - gi\|88010824\|gb\|ABD38858.1\| At1g53030 [Arabidopsis thaliana]	93.0	[0..1]	[72..1]
gi\|62901856 - gi\|62901856\|gb\|AAY18879.1\| COX17 [synthetic construct]	88.0	[0..10]	[72..25]
gi\|76608839 - gi\|76608839\|ref\|XP_877771.1\| PREDICTED: similar to COX17 homolog, cytochrome c oxidase assembly prot...	84.0	[0..11]	[72..27]
COX17_PIG - Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1 SV=1	81.0	[0..11]	[72..1]
gi\|55661839, gi\|... - gi\|55661839\|emb\|CAH71087.1\| OTTHUMP00000018371 [Homo sapiens], gi\|119629170\|gb\|EAX08765.1\| hCG202026...	81.0	[0..11]	[72..2]
gi\|114649557 - gi\|114649557\|ref\|XP_001149835.1\| PREDICTED: similar to COX17 [Pan troglodytes]	81.0	[0..11]	[72..2]
COX17_CANLF - Cytochrome c oxidase copper chaperone OS=Canis lupus familiaris GN=COX17 PE=3 SV=3	80.0	[0..11]	[72..2]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLQAQDSA CSLDKPSKDV VATETKPKKR ICCACPDTKK LRDECIVEHG ESACTKWIEA  60
   61 HILCLRSEGF KV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.72
Match:	1u96A
Description:	Solution Structure of Yeast Cox17 with Copper Bound
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits