YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218769942, gi...
Organism:	Pseudomonas aeruginosa LESB58
Length:	342 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218769942, gi....

Description	E-value	Query Range	Subject Range
gi\|152989135, gi... - gi\|94417067\|ref\|ZP_01296889.1\| hypothetical protein PaerP_01001263 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-78	[1..342]	[1..342]
gi\|116052038, gi... - gi\|46164609\|ref\|ZP_00205119.1\| COG0797: Lipoproteins [Pseudomonas aeruginosa UCBPP-PA14], gi\|1160520...	8.0E-76	[1..342]	[1..341]
gi\|24986563, gi\|... - gi\|26991484\|ref\|NP_746909.1\| rare lipoprotein A family [Pseudomonas putida KT2440], gi\|24986563\|gb\|A... tr\|I7CCA9\|I7CCA9... - Rare lipoprotein A family OS=Pseudomonas putida (strain DOT-T1E) GN=rlpA PE=3 SV=1	7.0E-65	[4..342]	[2..333]
gi\|82714721, gi\|... - gi\|82738225\|ref\|ZP_00901062.1\| Rare lipoprotein A [Pseudomonas putida F1], gi\|82714721\|gb\|EAP49798.1...	8.0E-65	[4..342]	[2..333]
gi\|71736614, gi\|... - gi\|71736614\|ref\|YP_276520.1\| RlpA family lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A], ...	8.0E-64	[4..342]	[2..341]
gi\|66047589, gi\|... - gi\|66047589\|ref\|YP_237430.1\| rare lipoprotein A [Pseudomonas syringae pv. syringae B728a], gi\|632582...	3.0E-63	[4..342]	[2..341]
tr\|Q87VW3\|Q87VW3... - Lipoprotein, rlpA family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4822 PE=3 SV=1 gi\|28855190, gi\|... - gi\|28871937\|ref\|NP_794556.1\| RlpA family lipoprotein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213927386, gi... - gi\|213968043\|ref\|ZP_03396189.1\| lipoprotein, rlpA family [Pseudomonas syringae pv. tomato T1], gi\|21...	6.0E-63	[4..342]	[2..341]
gi\|104783764, gi... - gi\|95112751\|emb\|CAK17479.1\| putative lipoprotein, rare lipoprotein A family [Pseudomonas entomophila... gi\|95112751 - gi\|95112751\|emb\|CAK17479.1\| putative lipoprotein, rare lipoprotein A family [Pseudomonas entomophila...	2.0E-62	[13..340]	[11..331]
gi\|70732754, gi\|... - gi\|70732754\|ref\|YP_262517.1\| RlpA family lipoprotein [Pseudomonas fluorescens Pf-5], gi\|68347053\|gb\|...	8.0E-62	[5..342]	[3..332]
gi\|67154143, gi\|... - gi\|67154143\|ref\|ZP_00415888.1\| Rare lipoprotein A [Azotobacter vinelandii AvOP], gi\|67088276\|gb\|EAM0... gi\|67154143 - gi\|67154143\|ref\|ZP_00415888.1\| Rare lipoprotein A [Azotobacter vinelandii AvOP]	1.0E-59	[26..342]	[22..325]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRVRSSLI LPAVCGLGLA AVLLSSCSSK APQQPARQAG ISGPGDYSRP HRDGAPWWDV  60
   61 DVSRIPDAVP MPHNGSVKAN PYTVLGKTYY P

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDARAYRMV GTASWYGTKF HGQATANGET YDLYGMTAAH KTLPLPSYVR VTNLDNGKSV  60
   61 IVRVNDRGPF YSDRVIDLSF AAAKKLGYAE TGTARVKVEG IDPVQW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.97
Match:	2bh0A
Description:	No description for 2bh0A was found.

Predicted Domain #3

Region A:
Residues: [198-342]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WAQRGRPAPM VLAQPKQAVA QAAPAAAQTQ AVAMAQPIET YTPPPAQHAA AVLPVQIDSK  60
   61 KNASLPADGL YLQVGAFANP DAAELLKAKL SGVTAAPVFI SSVVRNQQIL HRVRLGPIGS 120
  121 ADEVSRTQDS IRVANLGQPT LVRPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.221849
Match:	1utaA
Description:	Solution structure of the C-terminal RNP domain from the divisome protein FtsN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits