YRC Public Data Repository - Protein Structure Prediction

Protein:	RSMG_STRP4
Organism:	Streptococcus pneumoniae G54
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSMG_STRP4.

Description	E-value	Query Range	Subject Range
RSMG_STRPC - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M12 (strain MGAS9...	202.0	[0..1]	[237..1]
RSMG_STRPB - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M12 (strain MGAS2...	201.0	[0..1]	[237..1]
gi\|15674490, gi\|... - gi\|15674490\|ref\|NP_268664.1\| glucose-inhibited division protein B [Streptococcus pyogenes M1 GAS], g... gi\|71852874, gi\|... - gi\|71910092\|ref\|YP_281642.1\| 16S rRNA methyltransferase GidB [Streptococcus pyogenes MGAS5005], gi\|7... RSMG_STRP1 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M1 GN=rsmG PE=3 S... GIDB_STRPY - (Q9A1D7) Methyltransferase gidB (EC 2.1.-.-) (Glucose inhibited division protein B)	200.0	[0..1]	[237..1]
RSMG_STRPM - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M28 GN=rsmG PE=3 ... RSMG_STRPQ - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M3 (strain SSI-1)... RSMG_STRP3 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M3 (strain ATCC B... RSMG_STRP3, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M3 GN=rsmG PE=3 S... RSMG_STRPM - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M28 (strain MGAS6...	200.0	[0..1]	[237..1]
RSMG_STRPF - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M4 (strain MGAS10...	197.0	[0..1]	[237..1]
RSMG_STRPD - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M2 (strain MGAS10...	197.0	[0..1]	[237..1]
GIDB_LACLA, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. lactis GN=rsmG PE=3 SV=... RSMG_LACLA - Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. lactis (strain IL1403) ...	197.0	[0..1]	[237..1]
RSMG_STRP8, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M18 GN=rsmG PE=3 ... RSMG_STRPG - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M5 (strain Manfre... RSMG_STRP8 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M18 (strain MGAS8...	196.0	[0..1]	[237..1]
RSMG_STRP6 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M6 (strain ATCC B... RSMG_STRP6, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pyogenes serotype M6 GN=rsmG PE=3 S...	196.0	[0..1]	[237..1]
gi\|147922630, gi... - gi\|148985185\|ref\|ZP_01818424.1\| methyltransferase GidB [Streptococcus pneumoniae SP3-BS71], gi\|14792... RSMG_STRP2 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae serotype 2 (strain D39 /... gi\|237649984 - gi\|237649984\|ref\|ZP_04524236.1\| glucose-inhibited division protein B [Streptococcus pneumoniae CCRI ... gi\|169834139, gi... - gi\|169834139\|ref\|YP_001694710.1\| methyltransferase GidB [Streptococcus pneumoniae Hungary19A-6], gi\|... gi\|237821110 - gi\|237821110\|ref\|ZP_04596955.1\| glucose-inhibited division protein B [Streptococcus pneumoniae CCRI ... RSMG_STRZP - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae (strain P1031) GN=rsmG P... RSMG_STRR6 - Ribosomal RNA small subunit methyltransferase G OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R... gi\|149012342, gi... - gi\|149012342\|ref\|ZP_01833411.1\| methyltransferase GidB [Streptococcus pneumoniae SP19-BS75], gi\|1477... gi\|149007047, gi... - gi\|149007047\|ref\|ZP_01830716.1\| methyltransferase GidB [Streptococcus pneumoniae SP18-BS74], gi\|1477... gi\|149002659, gi... - gi\|149002659\|ref\|ZP_01827591.1\| methyltransferase GidB [Streptococcus pneumoniae SP14-BS69], gi\|1477... gi\|148989310, gi... - gi\|148989310\|ref\|ZP_01820690.1\| methyltransferase GidB [Streptococcus pneumoniae SP6-BS73], gi\|14792...	195.0	[0..1]	[237..1]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPKTFYNLL AEQNLPLSDQ QKEQFERYFE LLVEWNEKIN LTAITDKEEV YLKHFYDSIA  60
   61 PILQGLIPNE TIKLLDIGAG AGFPSLPMKI LYPELDVTII DSLNKRINFL QLLAQELDLN 120
  121 GVHFYHGRAE DFAQDKNFRA QYDFVTARAV ARMQVLSELT IPYLKVGGKL LALKASNAPE 180
  181 ELLEAKNALN LLFSKVEDNL SYALPNRDPR YITVVEKKKE TPNKYPRKAG MPNKRPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1xdzA
Description:	Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.05991383541555	bayes_pls_golite062009
methyltransferase activity	1.04943568976829	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.414568039011584	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: