YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167401326, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	400 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167401326, gi....

Description	E-value	Query Range	Subject Range
FTSW_PSEA6 - Putative lipid II flippase FtsW OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=ftsW ...	0.0	[28..400]	[26..398]
gi\|62178694, gi\|... - gi\|62178694\|ref\|YP_215111.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar... gi\|197291796, gi... - gi\|197291796\|gb\|EDY31146.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205334918, gi... - gi\|205334918\|gb\|EDZ21682.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205331453, gi... - gi\|205331453\|gb\|EDZ18217.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|161361835, gi... - gi\|161612471\|ref\|YP_001586436.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|200387891, gi... - gi\|200387891\|ref\|ZP_03214503.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|197938335, gi... - gi\|198243819\|ref\|YP_002214079.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|197240123, gi... - gi\|197261868\|ref\|ZP_03161942.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|197248187, gi... - gi\|197248187\|ref\|YP_002145113.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|213999322 - gi\|213999322\|ref\|ZP_03410057.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|213579883 - gi\|213579883\|ref\|ZP_03361709.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|205342503, gi... - gi\|205342503\|gb\|EDZ29267.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|195632809, gi... - gi\|195632809\|gb\|EDX51263.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205348663, gi... - gi\|205348663\|gb\|EDZ35294.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|205337406, gi... - gi\|205337406\|gb\|EDZ24170.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar ... gi\|194711192, gi... - gi\|194735690\|ref\|YP_002113145.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|194469496, gi... - gi\|194469496\|ref\|ZP_03075480.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero... gi\|194409971, gi... - gi\|194451667\|ref\|YP_002044097.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|194404690, gi... - gi\|194446027\|ref\|YP_002039359.1\| cell division protein FtsW [Salmonella enterica subsp. enterica ser... gi\|29136296, gi\|... - gi\|29140672\|ref\|NP_804014.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar... gi\|16759122 - gi\|16759122\|ref\|NP_454739.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar... gi\|16501412, gi\|... - gi\|25301518\|pir\|\|AD0518 cell division protein FtsW [imported] - Salmonella enterica subsp. enterica ... gi\|16418626, gi\|... - gi\|16763517\|ref\|NP_459132.1\| cell division protein FtsW [Salmonella typhimurium LT2], gi\|16418626\|gb... lcl\|NC_016856.1_... - [gene=ftsW] [protein=cell division protein FtsW] [protein_id=YP_005235786.1] [location=149428..15067... gi\|238911184 - gi\|238911184\|ref\|ZP_04655021.1\| cell division protein FtsW [Salmonella enterica subsp. enterica sero...	8.0E-99	[2..400]	[12..414]
gi\|56126656, gi\|... - gi\|56412399\|ref\|YP_149474.1\| cell division protein FtsW [Salmonella enterica subsp. enterica serovar...	2.0E-98	[2..400]	[12..414]
gi\|83585189, gi\|... - gi\|83585189\|ref\|ZP_00923839.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli 1... gi\|208733791, gi... - gi\|208812514\|ref\|ZP_03253843.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4045], g... gi\|157156576, gi... - gi\|75189189\|ref\|ZP_00702456.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli E... gi\|208807612, gi... - gi\|208807612\|ref\|ZP_03249949.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4206], g... gi\|209159489, gi... - gi\|209398089\|ref\|YP_002268697.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4115], ... gi\|208818936, gi... - gi\|208818936\|ref\|ZP_03259256.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4042], g... gi\|191167782, gi... - gi\|75229062\|ref\|ZP_00715642.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli B... gi\|217322537, gi... - gi\|217326316\|ref\|ZP_03442400.1\| cell division protein FtsW [Escherichia coli O157:H7 str. TW14588], ... gi\|75234326, gi\|... - gi\|75234326\|ref\|ZP_00718704.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli E... gi\|209910541, gi... - gi\|209917282\|ref\|YP_002291366.1\| cell division protein FtsW [Escherichia coli SE11], gi\|209910541\|db... gi\|75194306, gi\|... - gi\|75194306\|ref\|ZP_00704376.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli H... gi\|218363798, gi... - gi\|218557029\|ref\|YP_002389942.1\| cell division protein FtsW [Escherichia coli S88], gi\|218363798\|emb... gi\|75209390, gi\|... - gi\|75209390\|ref\|ZP_00709622.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli B... gi\|218359440, gi... - gi\|218552672\|ref\|YP_002385585.1\| cell division protein FtsW [Escherichia coli IAI1], gi\|218359440\|em... gi\|189000486, gi... - gi\|189000486\|gb\|EDU69472.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|168776933, gi... - gi\|187767757\|gb\|EDU31601.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168801516, gi... - gi\|189376371\|gb\|EDU94787.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|189370784, gi... - gi\|189370784\|gb\|EDU89200.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|170079728, gi... - gi\|170079728\|ref\|YP_001729048.1\| cell division membrane protein [Escherichia coli str. K-12 substr. ... gi\|169756483, gi... - gi\|170021555\|ref\|YP_001726509.1\| cell division protein FtsW [Escherichia coli ATCC 8739], gi\|1697564... gi\|195939305 - gi\|195939305\|ref\|ZP_03084687.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4024] gi\|170682663, gi... - gi\|170682663\|ref\|YP_001742211.1\| cell division protein FtsW [Escherichia coli SMS-3-5], gi\|170520381... gi\|227885006, gi... - gi\|227885006\|ref\|ZP_04002811.1\| MPE family murein precursor exporter [Escherichia coli 83972], gi\|22... gi\|237704238, gi... - gi\|237704238\|ref\|ZP_04534719.1\| cell division protein FtsW [Escherichia sp. 3_2_53FAA], gi\|226902150... gi\|238861520, gi... - gi\|238899490\|ref\|YP_002925286.1\| integral membrane protein involved in stabilizing FstZ ring during ... gi\|242375925, gi... - gi\|251783652\|ref\|YP_002997956.1\| hypothetical protein B21_00089 [Escherichia coli BL21], gi\|24237592... gi\|254287014, gi... - gi\|254287014\|ref\|YP_003052762.1\| integral membrane protein involved in stabilizing FstZ ring during ... gi\|254037504, gi... - gi\|254037504\|ref\|ZP_04871581.1\| cell division protein FtsW [Escherichia sp. 1_1_43], gi\|226840610\|gb... FTSW_ECOLI - Cell division protein ftsW - Escherichia coli gi\|253972112, gi... - gi\|254160211\|ref\|YP_003043319.1\| integral membrane protein involved in stabilizing FstZ ring during ... gi\|254791226, gi... - gi\|254791226\|ref\|YP_003076063.1\| cell division membrane protein [Escherichia coli O157:H7 str. TW143... gi\|218693558, gi... - gi\|218693558\|ref\|YP_002401225.1\| cell division protein FtsW [Escherichia coli 55989], gi\|218350290\|e... gi\|218687966, gi... - gi\|218687966\|ref\|YP_002396178.1\| cell division protein FtsW [Escherichia coli ED1a], gi\|218425530\|em... gi\|218703349, gi... - gi\|218703349\|ref\|YP_002410868.1\| cell division protein FtsW [Escherichia coli UMN026], gi\|218430446\|... gi\|218698512, gi... - gi\|218698512\|ref\|YP_002406141.1\| cell division protein FtsW [Escherichia coli IAI39], gi\|218368498\|e... gi\|89106972, gi\|... - gi\|89106972\|ref\|AP_000752.1\| integral membrane protein involved in stabilising FstZ ring during cell... gi\|15829347, gi\|... - gi\|15829347\|ref\|NP_308120.1\| cell division protein FtsW [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|110640302, gi... - gi\|110640302\|ref\|YP_668030.1\| cell division protein FtsW [Escherichia coli 536], gi\|110341894\|gb\|ABG... gi\|189357066, gi... - gi\|189357066\|gb\|EDU75485.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168751401, gi... - gi\|188014537\|gb\|EDU52659.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|168771313, gi... - gi\|189359920\|gb\|EDU78339.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4486], gi\|16... FTSW_ECO57 - Putative lipid II flippase FtsW OS=Escherichia coli O157:H7 GN=ftsW PE=3 SV=1 gi\|189365908, gi... - gi\|189365908\|gb\|EDU84324.1\| cell division protein FtsW [Escherichia coli O157:H7 str. EC4501], gi\|16... EG10344 - lipid II flippase; integral membrane protein; FtsZ ring stabilizer / Lipid II flippase; divisome pro... gi\|12512792, gi\|... - gi\|15799773\|ref\|NP_285785.1\| cell division protein FtsW [Escherichia coli O157:H7 EDL933], gi\|125127... FTSW_ECOL6 - Lipid II flippase FtsW OS=Escherichia coli O6 GN=ftsW PE=3 SV=1 gi\|117622375, gi... - gi\|117622375\|ref\|YP_851288.1\| cell division protein FtsW [Escherichia coli APEC O1], gi\|115511499\|gb... gi\|124499081, gi... - gi\|124530657\|ref\|ZP_01701241.1\| cell division protein FtsW [Escherichia coli B], gi\|124499081\|gb\|EAY... FTSW_ECOL6 - Putative lipid II flippase FtsW OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ft... EG10344 - lipid II flippase; integral membrane protein; FtsZ ring stabilizer / Lipid II flippase; divisome pro... gi\|75511687, gi\|... - gi\|75511687\|ref\|ZP_00734325.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli 5... gi\|73854185, gi\|... - gi\|74310708\|ref\|YP_309127.1\| cell division protein FtsW [Shigella sonnei Ss046], gi\|73854185\|gb\|AAZ8... gi\|75236007, gi\|... - gi\|75236007\|ref\|ZP_00720143.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli F... gi\|75256039, gi\|... - gi\|75256039\|ref\|ZP_00727752.1\| COG0772: Bacterial cell division membrane protein [Escherichia coli E... gi\|81239644, gi\|... - gi\|82775496\|ref\|YP_401843.1\| cell division protein FtsW [Shigella dysenteriae Sd197], gi\|81239644\|gb...	5.0E-98	[2..400]	[12..414]
gi\|91070727, gi\|... - gi\|91209153\|ref\|YP_539139.1\| cell division protein FtsW [Escherichia coli UTI89], gi\|91070727\|gb\|ABE... gi\|26246022, gi\|... - gi\|26246022\|ref\|NP_752061.1\| cell division protein FtsW [Escherichia coli CFT073], gi\|26106419\|gb\|AA...	8.0E-98	[2..400]	[13..415]
gi\|56383150, gi\|... - gi\|56479599\|ref\|NP_706044.2\| cell division protein FtsW [Shigella flexneri 2a str. 301], gi\|56383150... gi\|110613701, gi... - gi\|110804153\|ref\|YP_687673.1\| cell division protein FtsW [Shigella flexneri 5 str. 8401], gi\|1106137... gi\|30039898, gi\|... - gi\|30061656\|ref\|NP_835827.1\| cell division protein FtsW [Shigella flexneri 2a str. 2457T], gi\|300398...	9.0E-98	[2..400]	[12..414]
gi\|162353806, gi... - gi\|77633642\|ref\|ZP_00795764.1\| COG0772: Bacterial cell division membrane protein [Yersinia pestis An...	1.0E-97	[1..400]	[1..400]
gi\|77962097 - gi\|77962097\|ref\|ZP_00825922.1\| COG0772: Bacterial cell division membrane protein [Yersinia mollareti...	1.0E-97	[1..400]	[1..400]
gi\|77976101 - gi\|77976101\|ref\|ZP_00831634.1\| COG0772: Bacterial cell division membrane protein [Yersinia frederiks...	1.0E-97	[1..400]	[1..400]
gi\|77977553 - gi\|77977553\|ref\|ZP_00832998.1\| COG0772: Bacterial cell division membrane protein [Yersinia intermedi...	2.0E-97	[1..400]	[1..400]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMPGLGLFN TLKHYVMGSR ESDTTSMVLY DRTLLWLTFG LAIIGFVMVT SASMPIGQRL  60
   61 ANDPFLFAKR DALYLALAFG LSLVTLRIPM DVWQRYSNIM LLISIVLLLV VLVVGSSVNG 120
  121 ASRWIALGPL RIQPAELSKL SLFCYLASYL VRKVEEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSNFWGFCKP MGVMVILAVL LLAQPDLGTV VVLFITTLAM LFLAGAKMWQ FMAIIGSGAF  60
   61 AVCLLIIAEP YRMRRVTSFW NPWADPFGSG YQLTQSLMAF GRGEFWGQGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [268-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNSVQKLEYL PEAHTDFIFS ILGEELGYFG VVLALLMVFF VAFRAMSIGR R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [319-400]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALEIGQRFSG FLACSIGIWF SFQALVNVGA AAGMLPTKGL TLPLISYGGS SLIIMSTAIV  60
   61 LLLRIDFETR LAKAQAFVRS AR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits