YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166213911, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166213911, gi....

Description	E-value	Query Range	Subject Range
gi\|26250838, gi\|... - gi\|26250838\|ref\|NP_756878.1\| replicative DNA helicase [Escherichia coli CFT073], gi\|26111269\|gb\|AAN8... gi\|91075152, gi\|... - gi\|91213578\|ref\|YP_543564.1\| replicative DNA helicase [Escherichia coli UTI89], gi\|91075152\|gb\|ABE10... gi\|237703612, gi... - gi\|237703612\|ref\|ZP_04534093.1\| replicative DNA helicase [Escherichia sp. 3_2_53FAA], gi\|226901524\|g...	0.0	[1..468]	[13..483]
gi\|85676804, gi\|... - gi\|89110773\|ref\|AP_004553.1\| replicative DNA helicase [Escherichia coli str. K-12 substr. W3110], gi... gi\|169891344, gi... - gi\|170083509\|ref\|YP_001732829.1\| replicative DNA helicase [Escherichia coli str. K-12 substr. DH10B]... gi\|170021950, gi... - gi\|170021950\|ref\|YP_001726904.1\| replicative DNA helicase [Escherichia coli ATCC 8739], gi\|169756878... gi\|74314546, gi\|... - gi\|74314546\|ref\|YP_312965.1\| replicative DNA helicase [Shigella sonnei Ss046], gi\|73858023\|gb\|AAZ907... gi\|209914795, gi... - gi\|209921536\|ref\|YP_002295620.1\| replicative DNA helicase [Escherichia coli SE11], gi\|209914795\|dbj\|... gi\|81247790, gi\|... - gi\|82546379\|ref\|YP_410326.1\| replicative DNA helicase [Shigella boydii Sb227], gi\|81247790\|gb\|ABB684... gi\|170520838, gi... - gi\|170683120\|ref\|YP_001746441.1\| replicative DNA helicase [Escherichia coli SMS-3-5], gi\|170520838\|g... gi\|218363378, gi... - gi\|218556609\|ref\|YP_002389523.1\| replicative DNA helicase [Escherichia coli IAI1], gi\|218363378\|emb\|... gi\|110644387, gi... - gi\|110644387\|ref\|YP_672117.1\| replicative DNA helicase [Escherichia coli 536], gi\|110345979\|gb\|ABG72... gi\|215267459, gi... - gi\|215489387\|ref\|YP_002331818.1\| replicative DNA helicase [Escherichia coli O127:H6 str. E2348/69], ... gi\|218354492, gi... - gi\|218697760\|ref\|YP_002405427.1\| replicative DNA helicase [Escherichia coli 55989], gi\|218354492\|emb... gi\|218429899, gi... - gi\|218692335\|ref\|YP_002400547.1\| replicative DNA helicase [Escherichia coli ED1a], gi\|218429899\|emb\|... gi\|194415228, gi... - gi\|75211980\|ref\|ZP_00712035.1\| COG0305: Replicative DNA helicase [Escherichia coli B171], gi\|1944268... gi\|191168801, gi... - gi\|75227995\|ref\|ZP_00714686.1\| COG0305: Replicative DNA helicase [Escherichia coli B7A], gi\|19116880... gi\|187429016, gi... - gi\|75179601\|ref\|ZP_00699605.1\| COG0305: Replicative DNA helicase [Shigella boydii BS512], gi\|1877320... gi\|157156324, gi... - gi\|75188776\|ref\|ZP_00702043.1\| COG0305: Replicative DNA helicase [Escherichia coli E24377A], gi\|1571... DNAB_SHIFL - Replicative DNA helicase OS=Shigella flexneri GN=dnaB PE=3 SV=1 gi\|192931383, gi... - gi\|75258970\|ref\|ZP_00730338.1\| COG0305: Replicative DNA helicase [Escherichia coli E22], gi\|19306312... gi\|24054664, gi\|... - gi\|24115358\|ref\|NP_709868.1\| replicative DNA helicase [Shigella flexneri 2a str. 301], gi\|24054664\|g... gi\|75514811, gi\|... - gi\|75514811\|ref\|ZP_00737040.1\| COG0305: Replicative DNA helicase [Escherichia coli 53638], gi\|188495... gi\|30064641, gi\|... - gi\|30064641\|ref\|NP_838812.1\| replicative DNA helicase [Shigella flexneri 2a str. 2457T], gi\|30042900... gi\|192958908, gi... - gi\|75238588\|ref\|ZP_00722577.1\| COG0305: Replicative DNA helicase [Escherichia coli E110019], gi\|1930... EG10236 - replicative DNA helicase / Replicative DNA helicase; DNA-dependent ATPase involved in DNA synthesis;... gi\|191171963, gi... - gi\|75241080\|ref\|ZP_00724954.1\| COG0305: Replicative DNA helicase [Escherichia coli F11], gi\|19117196... gi\|238863449, gi... - gi\|238903161\|ref\|YP_002928957.1\| replicative DNA helicase [Escherichia coli BW2952], gi\|238863449\|gb... gi\|251787307, gi... - gi\|251787307\|ref\|YP_003001611.1\| hypothetical protein B21_03884 [Escherichia coli BL21], gi\|24237958... gi\|253326364, gi... - gi\|254290738\|ref\|YP_003056486.1\| replicative DNA helicase [Escherichia coli BL21(DE3)], gi\|253980045... gi\|254037049, gi... - gi\|254037049\|ref\|ZP_04871126.1\| replicative DNA helicase [Escherichia sp. 1_1_43], gi\|226840155\|gb\|E... gi\|254163988, gi... - gi\|254163988\|ref\|YP_003047096.1\| replicative DNA helicase [Escherichia coli B str. REL606], gi\|25397... gi\|194437201, gi... - gi\|83587175\|ref\|ZP_00925804.1\| COG0305: Replicative DNA helicase [Escherichia coli 101-1], gi\|194437... EG10236 - replicative DNA helicase / Replicative DNA helicase; DNA-dependent ATPase involved in DNA synthesis;... gi\|195183271 - gi\|195183271\|dbj\|BAG66812.1\| replicative DNA helicase [Escherichia coli O111:H-] DNAB_ECOLI - Replicative DNA helicase (EC 3.6.1.-) - Escherichia coli gi\|124527691, gi... - gi\|124527691\|ref\|ZP_01699126.1\| replicative DNA helicase [Escherichia coli B], gi\|124501134\|gb\|EAY48...	0.0	[1..468]	[1..471]
gi\|218367894, gi... - gi\|218561125\|ref\|YP_002394038.1\| replicative DNA helicase [Escherichia coli S88], gi\|218367894\|emb\|C... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaB PE=3... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6 GN=dnaB PE=3 SV=2 gi\|227886938, gi... - gi\|227886938\|ref\|ZP_04004743.1\| replicative DNA helicase [Escherichia coli 83972], gi\|227836079\|gb\|E... gi\|117626322, gi... - gi\|117626322\|ref\|YP_859645.1\| replicative DNA helicase [Escherichia coli APEC O1], gi\|115515446\|gb\|A...	0.0	[1..468]	[1..471]
gi\|157163521, gi... - gi\|75197910\|ref\|ZP_00707980.1\| COG0305: Replicative DNA helicase [Escherichia coli HS], gi\|157163521...	0.0	[1..468]	[1..471]
gi\|189374952, gi... - gi\|189374952\|gb\|EDU93368.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|15804644, gi\|... - gi\|15804644\|ref\|NP_290685.1\| replicative DNA helicase [Escherichia coli O157:H7 EDL933], gi\|12519003... gi\|168798288, gi... - gi\|189379073\|gb\|EDU97489.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|15834288, gi\|... - gi\|15834288\|ref\|NP_313061.1\| replicative DNA helicase [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|195935835 - gi\|195935835\|ref\|ZP_03081217.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4024] gi\|208728580, gi... - gi\|208808779\|ref\|ZP_03251116.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|168760898, gi... - gi\|189368529\|gb\|EDU86945.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168766309, gi... - gi\|189364196\|gb\|EDU82615.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|187769938, gi... - gi\|187769938\|gb\|EDU33782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189001628, gi... - gi\|189001628\|gb\|EDU70614.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168748103, gi... - gi\|188017417\|gb\|EDU55539.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168755219, gi... - gi\|189357516\|gb\|EDU75935.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|208734730, gi... - gi\|208813453\|ref\|ZP_03254782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|254595471, gi... - gi\|254796071\|ref\|YP_003080908.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14359], g... gi\|208738898, gi... - gi\|208818775\|ref\|ZP_03259095.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4042], gi\|... DNAB_ECO57 - Replicative DNA helicase OS=Escherichia coli O157:H7 GN=dnaB PE=3 SV=1 gi\|209398031, gi... - gi\|209398031\|ref\|YP_002273592.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4115], gi... gi\|209751276, gi... - pir\|\|F86098 replicative DNA helicase, part of primosome [imported] - Escherichia coli (strain O157:H... gi\|217325653, gi... - gi\|217325653\|ref\|ZP_03441737.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14588], gi...	0.0	[1..468]	[1..471]
gi\|77978791, gi\|... - gi\|77978791\|ref\|ZP_00834216.1\| COG0305: Replicative DNA helicase [Yersinia intermedia ATCC 29909], g... gi\|238716126, gi... - gi\|77957494\|ref\|ZP_00821548.1\| COG0305: Replicative DNA helicase [Yersinia bercovieri ATCC 43970], g...	0.0	[1..468]	[1..468]
gi\|81243686, gi\|... - gi\|82779538\|ref\|YP_405887.1\| replicative DNA helicase [Shigella dysenteriae Sd197], gi\|81243686\|gb\|A...	0.0	[1..468]	[1..471]
gi\|238717656, gi... - gi\|77961093\|ref\|ZP_00824940.1\| COG0305: Replicative DNA helicase [Yersinia mollaretii ATCC 43969], g...	0.0	[1..468]	[1..468]
gi\|77972795, gi\|... - gi\|77972795\|ref\|ZP_00828352.1\| COG0305: Replicative DNA helicase [Yersinia frederiksenii ATCC 33641]...	0.0	[1..468]	[1..468]
gi\|85060110, gi\|... - gi\|85060110\|ref\|YP_455812.1\| replicative DNA helicase [Sodalis glossinidius str. 'morsitans'], gi\|84...	0.0	[1..468]	[1..468]

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Predicted Domain #1

Region A:
Residues: [1-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKKPTNKM TEPRDRQMEG LKLPPHSLEA EQSVLGGLML DNERWDNVSE RVASKDFFSR  60
   61 PHRRIFTEMQ RLLENSKPID LITLSESLEQ KGDLDSVGGF AYLAELSKNT PSAANIGAYA 120
  121 DIVRERAVVR EMISVANEIA DAGYDPQGRS SEDLLDLAES KVFQIAESRA SKDEGPKSVD 180
  181 RILEDTVARI EQLYQRPHDG VTGVSTGFTD LDKKTAGLQK SDLIIVAARP SMGKTTFAMN 240
  241 LCENAAMMQD KPVLIFSLEM PGDQIMMRML ASLSHVDQTR IRTGQLDDED WARISSTMGI 300
  301 LMEKRNMYID DSSGLTPTEV RSRARRIFRE HGGLSLIMID YLQLMRVPSL SDNRTLEIAE 360
  361 ISRSLKALAK ELQVPVVALS QLNRSLEQRA DKRPVNSDLR ESGSIEQDAD LIMFIYRDEV 420
  421 YHENSDEKGI AQIILGKQRN GPIGSVRLKF NGQWSRFDNY AGPQYDDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	2q6tA
Description:	No description for 2q6tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits