YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|164712794, gi...
Organism:	Bacillus anthracis str. A0488
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|164712794, gi....

Description	E-value	Query Range	Subject Range
gi\|51974460, gi\|... - gi\|52140991\|ref\|YP_085840.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51974460...	1.0E-84	[1..259]	[1..259]
gi\|49478675, gi\|... - gi\|49478675\|ref\|YP_038565.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	3.0E-84	[1..259]	[1..259]
gi\|42739616, gi\|... - gi\|42783687\|ref\|NP_980934.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC...	5.0E-84	[1..259]	[1..259]
gi\|74490747, gi\|... - gi\|75761762\|ref\|ZP_00741700.1\| D-alanyl-D-alanine metallocarboxypeptidase [Bacillus thuringiensis se... gi\|228903031, gi... - gi\|228903031\|ref\|ZP_04067170.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL 4222...	2.0E-83	[1..259]	[1..259]
gi\|228960778, gi... - gi\|228960778\|ref\|ZP_04122416.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228954782, gi... - gi\|228954782\|ref\|ZP_04116803.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|229129797, gi... - gi\|229129797\|ref\|ZP_04258764.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4], gi\|... gi\|229111975, gi... - gi\|229111975\|ref\|ZP_04241519.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15], gi\|2... gi\|228711176, gi... - gi\|229072017\|ref\|ZP_04205227.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185], gi\|228... gi\|30022592, gi\|... - gi\|30022592\|ref\|NP_834223.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579], gi\|29... gi\|229048218, gi... - gi\|229048218\|ref\|ZP_04193787.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676], gi\|2287... gi\|229192711, gi... - gi\|229192711\|ref\|ZP_04319670.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876], gi... gi\|229180778, gi... - gi\|229180778\|ref\|ZP_04308116.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W], gi\|22... gi\|229152706, gi... - gi\|229152706\|ref\|ZP_04280893.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550], gi\|2286... gi\|228636459, gi... - gi\|229147071\|ref\|ZP_04275431.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24], gi\|... gi\|206969981, gi... - gi\|206969981\|ref\|ZP_03230935.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ... gi\|218158864, gi... - gi\|218230907\|ref\|YP_002369309.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus...	2.0E-83	[1..259]	[1..259]
gi\|228747635, gi... - gi\|229013713\|ref\|ZP_04170842.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048], gi... gi\|163864442, gi... - gi\|89205296\|ref\|ZP_01183867.1\| Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins [Bacill...	4.0E-81	[1..259]	[1..259]
gi\|89200341, gi\|... - gi\|89200341\|ref\|ZP_01179095.1\| Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins [Bacill...	2.0E-75	[1..259]	[1..259]
gi\|229121640, gi... - gi\|229121640\|ref\|ZP_04250865.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|228832483, gi... - gi\|228927157\|ref\|ZP_04090220.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|227815110, gi... - gi\|227815110\|ref\|YP_002815119.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra... gi\|190560931, gi... - gi\|190567876\|ref\|ZP_03020787.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|218539954, gi... - gi\|218903217\|ref\|YP_002451051.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus... gi\|65319377, gi\|... - gi\|65319377\|ref\|ZP_00392336.1\| COG1876: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.... gi\|254758292 - gi\|254758292\|ref\|ZP_05210319.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|164714096, gi... - gi\|165870208\|ref\|ZP_02214864.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254751420 - gi\|254751420\|ref\|ZP_05203457.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|167632771, gi... - gi\|167632771\|ref\|ZP_02391097.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254743711 - gi\|254743711\|ref\|ZP_05201396.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|49332827, gi\|... - gi\|49481271\|ref\|YP_036216.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon... gi\|167638318, gi... - gi\|167638318\|ref\|ZP_02396595.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254737104 - gi\|254737104\|ref\|ZP_05194808.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|49184934, gi\|... - gi\|49184934\|ref\|YP_028186.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|170669471, gi... - gi\|170686395\|ref\|ZP_02877616.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254720995 - gi\|254720995\|ref\|ZP_05182786.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|47502510, gi\|... - gi\|47527362\|ref\|YP_018711.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|170706108, gi... - gi\|170706108\|ref\|ZP_02896570.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254684660 - gi\|254684660\|ref\|ZP_05148520.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|30262093, gi\|... - gi\|30262093\|ref\|NP_844470.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|177650783, gi... - gi\|177650783\|ref\|ZP_02933680.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|229602639, gi... - gi\|229602639\|ref\|YP_002866454.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra...	4.0E-71	[1..256]	[1..246]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIIISAA TIVIGITSFA YFGSKSPLQN EARAVESQQH SNHQKEEIPA FPKADHNAKK  60
   61 LDNDFSVVTN PDSNLVLVNK HRKLPDGYTP EDL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.811	N/A	N/A	d.9.1	Interleukin 8-like chemokines
View	Download	0.763	N/A	N/A	g.3.7	Scorpion toxin-like
View	Download	0.699	N/A	N/A	d.9.2	Description not found.
View	Download	0.683	N/A	N/A	d.9.2	Description not found.
View	Download	0.588	N/A	N/A	d.58.24	CheY-binding domain of CheA

Predicted Domain #2

Region A:
Residues: [94-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRPNVPFTSP KDKEKTLLRK DAADALENMF EAAKKEGLEL TAVSGYRSYK RQKSLHDTYV  60
   61 RRQGKAEADS VSAIPGTSEH QTGLAMDISS KSAKFQLEPI FGETAEGKWV AKHAHEFGFV 120
  121 IRYLEDKTET TEYSYEPWHL RYVGNPYATY IYKHHLTLEE AMEDKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1r44A
Description:	Crystal Structure of VanX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009
binding	0.116181943513295	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: