YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167467829
Organism:	Yersinia pestis FV-1
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167467829.

Description	E-value	Query Range	Subject Range
gi\|110615004, gi... - gi\|110805456\|ref\|YP_688976.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [S... gi\|24051806, gi\|... - ref\|NP_707375.1\| PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin [S...	4.0E-32	[1..115]	[36..150]
gi\|77978444 - gi\|77978444\|ref\|ZP_00833873.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	4.0E-31	[1..115]	[15..129]
gi\|117672813, gi... - gi\|77629962\|ref\|ZP_00792548.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	1.0E-30	[1..115]	[1..115]
gi\|205341557, gi... - gi\|205341557\|gb\|EDZ28321.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|194444735, gi... - gi\|194444735\|ref\|YP_002040574.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|168263867, gi... - gi\|205347624\|gb\|EDZ34255.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|195634000, gi... - gi\|195634000\|gb\|EDX52352.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iia component... gi\|168238984, gi... - gi\|197288295\|gb\|EDY27680.1\| N,n'-diacetylchitobiose-specific phosphotransferase IIA component [Salmo... gi\|205336723, gi... - gi\|205336723\|gb\|EDZ23487.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|167991866, gi... - gi\|205329682\|gb\|EDZ16446.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|168233232, gi... - gi\|205332683\|gb\|EDZ19447.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|161614281, gi... - gi\|161614281\|ref\|YP_001588246.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|167552330, gi... - gi\|205322957\|gb\|EDZ10796.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacomponent ... gi\|206708980, gi... - gi\|207857177\|ref\|YP_002243828.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|204323200, gi... - gi\|204927858\|ref\|ZP_03219059.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompon... gi\|205352961, gi... - gi\|205352961\|ref\|YP_002226762.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... lcl\|NC_016856.1_... - [gene=celC] [protein=PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA] [protein_i... gi\|197940268, gi... - gi\|198245752\|ref\|YP_002215810.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|200389919, gi... - gi\|200389919\|ref\|ZP_03216530.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompon... gi\|197262242, gi... - gi\|197262242\|ref\|ZP_03162316.1\| PTS system, Lactose/Cellobiose specific IIA subunit [Salmonella ente... gi\|197362623, gi... - gi\|197362623\|ref\|YP_002142260.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|194737684, gi... - gi\|194737684\|ref\|YP_002114334.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|197249987, gi... - gi\|197249987\|ref\|YP_002146721.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompo... gi\|194449994, gi... - gi\|194449994\|ref\|YP_002045322.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|194456013, gi... - gi\|194469649\|ref\|ZP_03075633.1\| N,n'-diacetylchitobiose-specific phosphotransferase enzyme iiacompon... gi\|16764665, gi\|... - gi\|16764665\|ref\|NP_460280.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa... gi\|238910867 - gi\|238910867\|ref\|ZP_04654704.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|62127538, gi\|... - gi\|62179905\|ref\|YP_216322.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa... gi\|56413700, gi\|... - gi\|56413700\|ref\|YP_150775.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sa...	2.0E-30	[1..115]	[1..115]
gi\|218705234, gi... - gi\|218705234\|ref\|YP_002412753.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|145494 - gi\|145494\|gb\|AAA23556.1\| PTS enzyme III cel	4.0E-30	[1..115]	[1..115]
PTQA_SHIFL - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Shigella flexneri GN=chb... gi\|1742833, gi\|8... - gi\|89108575\|ref\|AP_002355.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Escherich... gi\|30041245, gi\|... - gi\|30062996\|ref\|NP_837167.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sh... gi\|13361909, gi\|... - gi\|15831696\|ref\|NP_310469.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... PTQA_ECOL6 - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Escherichia coli O6:H1 (... PTQA_ECOL6 - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Escherichia coli O6 GN=c... gi\|110641856, gi... - gi\|110641856\|ref\|YP_669586.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [E... EG10142 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS / PTS Enzyme IIA(Chb), N,N'-diacetylchi... EG10142 - N,N'-diacetylchitobiose-specific enzyme IIA component of PTS / PTS Enzyme IIA(Chb), N,N'-diacetylchi... PTQA_ECO57 - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component OS=Escherichia coli O157:H7... gi\|15802147, gi\|... - gi\|15802147\|ref\|NP_288169.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... gi\|254793354, gi... - gi\|254793354\|ref\|YP_003078191.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|253973696, gi... - gi\|254161795\|ref\|YP_003044903.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|253324354, gi... - gi\|254288583\|ref\|YP_003054331.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|251785184, gi... - gi\|251785184\|ref\|YP_002999488.1\| hypothetical protein B21_01693 [Escherichia coli BL21], gi\|24237745... gi\|56479914, gi\|... - gi\|56479914\|ref\|NP_707375.2\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sh... gi\|238900950, gi... - gi\|238900950\|ref\|YP_002926746.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche... gi\|227837414, gi... - gi\|227885841\|ref\|ZP_04003646.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|75227703, gi\|... - gi\|75227703\|ref\|ZP_00714438.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75236795 - gi\|75236795\|ref\|ZP_00720866.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75195806 - gi\|75195806\|ref\|ZP_00705876.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|194413456, gi... - gi\|75210223\|ref\|ZP_00710391.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|188492461, gi... - gi\|75513768\|ref\|ZP_00736144.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|74311945, gi\|... - gi\|74311945\|ref\|YP_310364.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Sh... gi\|75241389, gi\|... - gi\|75241389\|ref\|ZP_00725240.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75256138, gi\|... - gi\|75256138\|ref\|ZP_00727834.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|83586035, gi\|... - gi\|83586035\|ref\|ZP_00924673.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|75190769, gi\|... - gi\|75190769\|ref\|ZP_00704036.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|83569660 - gi\|83569660\|ref\|ZP_00921111.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|170518575, gi... - gi\|170680857\|ref\|YP_001743513.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escher... gi\|195937420 - gi\|195937420\|ref\|ZP_03082802.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|208810630, gi... - gi\|208810630\|ref\|ZP_03252506.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escheri... PTCA_ECOLI, PTQA... - N,N'-diacetylchitobiose-specific phosphotransferase enzyme IIA component (EC 2.7.1.-) (PTS system N,... gi\|209919097, gi... - gi\|209919097\|ref\|YP_002293181.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|215265025, gi... - gi\|215486953\|ref\|YP_002329384.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|217317964, gi... - gi\|217328617\|ref\|ZP_03444698.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escheri... gi\|218554302, gi... - gi\|218554302\|ref\|YP_002387215.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|218369683, gi... - gi\|218699697\|ref\|YP_002407326.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|168749446, gi... - gi\|188016270\|gb\|EDU54392.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|189367479, gi... - gi\|189367479\|gb\|EDU85895.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|168770500, gi... - gi\|189360645\|gb\|EDU79064.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|189371917, gi... - gi\|189371917\|gb\|EDU90333.1\| PTS system, N,N'-diacetylchitobiose-specific EIIA component [Escherichia... gi\|170081393, gi... - gi\|170081393\|ref\|YP_001730713.1\| N,N'-diacetylchitobiose-specific enzyme IIA component of PTS [Esche...	5.0E-30	[1..115]	[1..115]
gi\|238796688, gi... - gi\|77961647\|ref\|ZP_00825480.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	5.0E-30	[1..115]	[1..115]
gi\|115513032, gi... - gi\|117623908\|ref\|YP_852821.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [E... gi\|91072524, gi\|... - gi\|91210950\|ref\|YP_540936.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA [Es... gi\|218427241, gi... - gi\|218689677\|ref\|YP_002397889.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|218558604, gi... - gi\|218558604\|ref\|YP_002391517.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA... gi\|237705685, gi... - gi\|237705685\|ref\|ZP_04536166.1\| N,N'-diacetylchitobiose-specific PTS system transporter subunit IIA ... gi\|145500 - gi\|145500\|gb\|AAA23559.1\| PTS enzyme III cel	5.0E-30	[1..115]	[1..115]
gi\|238714276, gi... - gi\|77957765\|ref\|ZP_00821813.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	7.0E-30	[1..115]	[1..115]
gi\|77973078 - gi\|77973078\|ref\|ZP_00828630.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	9.0E-30	[1..114]	[15..128]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDLSSIVDN EQTSDALEDV VMGLIINAGQ ARSLAYNALK QAKAGDFAQA DELMAQSRSA  60
   61 LNDAHLVQTQ LIEADQGEGK TKVTLVLVHA QDHLMNAMLA RELITELIEL HQKIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1wcrA
Description:	Trimeric Structure of the Enzyme IIA from Escherichia coli Phosphotransferase System Specific for N,N'-Diacetylchitobiose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits