YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166961366, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166961366, gi....

Description	E-value	Query Range	Subject Range
gi\|84363249 - gi\|84363249\|ref\|ZP_00987845.1\| COG1792: Cell shape-determining protein [Burkholderia dolosa AUO158]	3.0E-43	[8..158]	[379..527]
gi\|77973455 - gi\|77973455\|ref\|ZP_00829003.1\| COG2891: Cell shape-determining protein [Yersinia frederiksenii ATCC ...	1.0E-38	[1..162]	[1..162]
gi\|37527916, gi\|... - gi\|37527916\|ref\|NP_931261.1\| rod shape-determining protein MreD [Photorhabdus luminescens subsp. lau...	1.0E-38	[1..162]	[1..162]
gi\|77958849 - gi\|77958849\|ref\|ZP_00822876.1\| COG2891: Cell shape-determining protein [Yersinia bercovieri ATCC 439...	2.0E-38	[1..162]	[1..162]
gi\|77978747 - gi\|77978747\|ref\|ZP_00834172.1\| COG2891: Cell shape-determining protein [Yersinia intermedia ATCC 299...	3.0E-38	[1..162]	[1..162]
gi\|50119229, gi\|... - gi\|50119229\|ref\|YP_048396.1\| rod shape-determining protein MreD [Pectobacterium atrosepticum SCRI104...	2.0E-37	[1..162]	[1..162]
gi\|200387873, gi... - gi\|200387873\|ref\|ZP_03214485.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|198245977, gi... - gi\|198245977\|ref\|YP_002217341.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|197095706, gi... - gi\|197364229\|ref\|YP_002143866.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|197243139, gi... - gi\|197264884\|ref\|ZP_03164958.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|213028133 - gi\|213028133\|ref\|ZP_03342580.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|207858620, gi... - gi\|207858620\|ref\|YP_002245271.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|205274054, gi... - gi\|205354273\|ref\|YP_002228074.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|204319954, gi... - gi\|204931187\|ref\|ZP_03221981.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|195633161, gi... - gi\|195633161\|gb\|EDX51575.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|205336192, gi... - gi\|205336192\|gb\|EDZ22956.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|197287898, gi... - gi\|197287898\|gb\|EDY27286.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|168233955, gi... - gi\|205332043\|gb\|EDZ18807.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|194737883, gi... - gi\|194737883\|ref\|YP_002116320.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|194472772, gi... - gi\|194472772\|ref\|ZP_03078756.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|194448297, gi... - gi\|194448297\|ref\|YP_002047400.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|194445836, gi... - gi\|194445836\|ref\|YP_002042627.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... gi\|16421932, gi\|... - gi\|16766667\|ref\|NP_462282.1\| rod shape-determining protein MreD [Salmonella typhimurium LT2], gi\|164... gi\|213647006 - gi\|213647006\|ref\|ZP_03377059.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|29139255, gi\|... - gi\|29143620\|ref\|NP_806962.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica... gi\|56129556, gi\|... - gi\|56415299\|ref\|YP_152374.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica... gi\|213582027 - gi\|213582027\|ref\|ZP_03363853.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|213428312 - gi\|213428312\|ref\|ZP_03361062.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|25355498, gi\|... - gi\|25355498\|pir\|\|AI0911 rod shape-determining protein [imported] - Salmonella enterica subsp. enteri... gi\|213051959 - gi\|213051959\|ref\|ZP_03344837.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|16762131 - gi\|16762131\|ref\|NP_457748.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica... gi\|214002741 - gi\|214002741\|ref\|ZP_03413476.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|213859944 - gi\|213859944\|ref\|ZP_03385648.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enter... gi\|167993956, gi... - gi\|205328087\|gb\|EDZ14851.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|205322521, gi... - gi\|205322521\|gb\|EDZ10360.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ... gi\|161616391, gi... - gi\|161616391\|ref\|YP_001590356.1\| rod shape-determining protein MreD [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=mreD] [protein=rod shape-determining protein MreD] [protein_id=YP_005239558.1] [location=compl...	4.0E-36	[1..162]	[2..163]
gi\|62181880, gi\|... - gi\|62181880\|ref\|YP_218297.1\| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...	5.0E-36	[1..162]	[2..163]
gi\|82545522, gi\|... - gi\|82545522\|ref\|YP_409469.1\| rod shape-determining protein MreD [Shigella boydii Sb227], gi\|81246933...	1.0E-35	[1..162]	[1..162]
gi\|82778556, gi\|... - gi\|82778556\|ref\|YP_404905.1\| rod shape-determining protein MreD [Shigella dysenteriae Sd197], gi\|812...	2.0E-35	[1..162]	[1..162]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRYSSHGRW VIWLSFLIAM VLQIMPWPEQ IYMFRPSWLA LVLIYWVMAL PHRVNVGTGF  60
   61 ILGLIMDLIL GSTLGVRALA FSIIAYLVAF KFQLFRNMAL WQQALIVMLL SLTMDVVVFW 120
  121 SEFLVINVAF RPEVFWSSVV NGILWPWLFL LMRKIRRQFS VQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.086186
Match:	PF04093.3
Description:	No description for PF04093.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits