YRC Public Data Repository - Protein Structure Prediction

Protein:	YOHJ_ECO45
Organism:	Escherichia coli S88
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YOHJ_ECO45.

Description	E-value	Query Range	Subject Range
gi\|77975902 - gi\|77975902\|ref\|ZP_00831436.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia frederi...	131.0	[0..1]	[132..1]
gi\|238793459, gi... - gi\|77978846\|ref\|ZP_00834270.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia interme...	130.0	[0..1]	[132..1]
Y2828_ERWCT - UPF0299 membrane protein ECA2828 OS=Erwinia carotovora subsp. atroseptica GN=ECA2828 PE=3 SV=1 Y2828_PECAS - UPF0299 membrane protein ECA2828 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN...	130.0	[0..1]	[132..1]
gi\|77959262, gi\|... - gi\|77959262\|ref\|ZP_00823283.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia bercovi...	129.0	[0..1]	[132..1]
gi\|22126533, gi\|... - gi\|22126533\|ref\|NP_669956.1\| hypothetical protein y2654 [Yersinia pestis KIM], gi\|21959534\|gb\|AAM862... gi\|45436089, gi\|... - gi\|45441229\|ref\|NP_992768.1\| hypothetical protein YP_1404 [Yersinia pestis biovar Microtus str. 9100...	128.0	[0..1]	[132..14]
Y1529_YERPS - UPF0299 membrane protein YPTB1529 OS=Yersinia pseudotuberculosis GN=YPTB1529 PE=3 SV=1 Y1514_YERPE - UPF0299 membrane protein YPO1514/y2654/YP_1404 OS=Yersinia pestis GN=YPO1514 PE=3 SV=2 gi\|229841494, gi... - gi\|229841494\|ref\|ZP_04461653.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|229689214, gi... - gi\|229843606\|ref\|ZP_04463749.1\| conserved inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|229894290, gi... - gi\|229894290\|ref\|ZP_04509473.1\| conserved inner membrane protein [Yersinia pestis Pestoides A], gi\|2... Y1529_YERPS - UPF0299 membrane protein YPTB1529 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB... Y3025_YERPG - UPF0299 membrane protein YpAngola_A3025 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A... gi\|115347266, gi... - gi\|218928655\|ref\|YP_002346530.1\| hypothetical protein YPO1514 [Yersinia pestis CO92], gi\|16121787\|re... Y2460_YERP3 - UPF0299 membrane protein YpsIP31758_2460 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 317... Y2559_YERPY - UPF0299 membrane protein YPK_2559 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_... gi\|89105601, gi\|... - gi\|89105601\|ref\|ZP_01178117.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia pestis ... gi\|167469197 - gi\|167469197\|ref\|ZP_02333901.1\| hypothetical protein YpesF_15214 [Yersinia pestis FV-1] Y809_YERPA - UPF0299 membrane protein YPA_0809 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0809 PE=3 S... Y2465_YERPN - UPF0299 membrane protein YPN_2465 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2465 PE=3 ... Y1639_YERPB - UPF0299 membrane protein YPTS_1639 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS... gi\|165991674, gi... - gi\|166009119\|ref\|ZP_02230017.1\| lrgA family protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|149366435, gi... - gi\|149366435\|ref\|ZP_01888469.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149290809\|... gi\|165923508, gi... - gi\|165924448\|ref\|ZP_02220280.1\| lrgA family protein [Yersinia pestis biovar Orientalis str. F1991016... Y1460_YERPP - UPF0299 membrane protein YPDSF_1460 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1460 PE=3 SV=1 gi\|167050127, gi... - gi\|167400178\|ref\|ZP_02305691.1\| lrgA family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166211666, gi... - gi\|166211666\|ref\|ZP_02237701.1\| lrgA family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167424150, gi... - gi\|167424150\|ref\|ZP_02315903.1\| lrgA family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167421874, gi... - gi\|167421874\|ref\|ZP_02313627.1\| lrgA family protein [Yersinia pestis biovar Orientalis str. MG05-102...	122.0	[0..1]	[132..1]
gi\|77962480 - gi\|77962480\|ref\|ZP_00826300.1\| COG1380: Putative effector of murein hydrolase LrgA [Yersinia mollare...	121.0	[0..1]	[132..1]
gi\|26248521, gi\|... - gi\|26248521\|ref\|NP_754561.1\| hypothetical protein c2673 [Escherichia coli CFT073], gi\|26108926\|gb\|AA... gi\|24052575, gi\|... - ref\|NP_708041.1\| hypothetical protein SF2226 [Shigella flexneri 2a str. 301], gb\|AAN43748.1\| orf, c... gi\|226900972, gi... - gi\|237704606\|ref\|ZP_04535087.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91211427, gi\|... - gi\|91211427\|ref\|YP_541413.1\| hypothetical protein UTI89_C2414 [Escherichia coli UTI89], gi\|91073001\|...	118.0	[0..1]	[132..13]
gi\|194431391, gi... - gi\|83571127\|ref\|ZP_00922568.1\| COG1380: Putative effector of murein hydrolase LrgA [Shigella dysente...	116.0	[0..1]	[132..1]
gi\|189362790, gi... - gi\|189362790\|gb\|EDU81209.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4486], gi\|168767754... gi\|168773148, gi... - gi\|187771327\|gb\|EDU35171.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4196], gi\|168773148... gi\|15802697, gi\|... - gi\|15802697\|ref\|NP_288724.1\| hypothetical protein Z3396 [Escherichia coli O157:H7 EDL933], gi\|125164... gi\|75234029, gi\|... - gi\|75234029\|ref\|ZP_00718446.1\| COG1380: Putative effector of murein hydrolase LrgA [Escherichia coli... gi\|189002192, gi... - gi\|189002192\|gb\|EDU71178.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4076], gi\|168779984... gi\|209766346, gi... - pir\|\|C85852 hypothetical protein yohJ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... YOHJ_ECO24 - UPF0299 membrane protein YohJ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yohJ PE=3 SV=1 gi\|189371406, gi... - gi\|189371406\|gb\|EDU89822.1\| LrgA family protein [Escherichia coli O157:H7 str. EC869], gi\|168788951\|... gi\|168801170, gi... - gi\|189376628\|gb\|EDU95044.1\| LrgA family protein [Escherichia coli O157:H7 str. EC508], gi\|168801170\|... gi\|15832287, gi\|... - gi\|15832287\|ref\|NP_311060.1\| hypothetical protein ECs3033 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195935517 - gi\|195935517\|ref\|ZP_03080899.1\| hypothetical protein EscherichcoliO157_03512 [Escherichia coli O157:... gi\|208806318, gi... - gi\|208806318\|ref\|ZP_03248655.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|208814119, gi... - gi\|208814119\|ref\|ZP_03255448.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|254593440, gi... - gi\|254794040\|ref\|YP_003078877.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|168750521, gi... - gi\|188015334\|gb\|EDU53456.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4113], gi\|168750521... gi\|168757723, gi... - gi\|189355368\|gb\|EDU73787.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4401], gi\|168757723... gi\|168763797, gi... - gi\|189366072\|gb\|EDU84488.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4501], gi\|168763797... YOHJ_ECO57 - UPF0299 membrane protein YohJ OS=Escherichia coli O157:H7 GN=yohJ PE=3 SV=1 gi\|208819983, gi... - gi\|208819983\|ref\|ZP_03260303.1\| LrgA family protein [Escherichia coli O157:H7 str. EC4042], gi\|20874... YOHJ_ECO5E - UPF0299 membrane protein YohJ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yohJ PE=3 SV=1 gi\|217327487, gi... - gi\|217327487\|ref\|ZP_03443570.1\| LrgA family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173...	116.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTLNIIWQ YLRAFVLIYA CLYAGIFIAS LLPVTIPGSI IGMLILFVLL ALQILPAKWV  60
   61 NPGCYVLIRY MALLFVPIGV GVMQYFDLLR AQFGPVVVSC AVSTLVVFLV VSWSSQLVHG 120
  121 ERKVVGQKGS EE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	56.055517
Match:	PF03788.5
Description:	No description for PF03788.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.864	0.000	integral to membrane	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits