YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167422002, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167422002, gi....

Description	E-value	Query Range	Subject Range
gi\|186699681, gi... - gi\|186896655\|ref\|YP_001873767.1\| glutaminase [Yersinia pseudotuberculosis PB1/+], gi\|186699681\|gb\|AC... gi\|170023072, gi... - gi\|170023072\|ref\|YP_001719577.1\| glutaminase [Yersinia pseudotuberculosis YPIII], gi\|169749606\|gb\|AC... Q666M7\|Q666M7_YERPS - Putative glutaminase - Yersinia pseudotuberculosis gi\|51597531, gi\|... - gi\|51597531\|ref\|YP_071722.1\| glutaminase [Yersinia pseudotuberculosis IP 32953], gi\|51590813\|emb\|CAH...	0.0	[1..308]	[1..308]
gi\|117672578, gi... - gi\|77630197\|ref\|ZP_00792783.1\| COG2066: Glutaminase [Yersinia pseudotuberculosis IP 31758], gi\|15395...	0.0	[1..308]	[1..308]
lcl\|NC_016856.1_... - [gene=yneH] [protein=glutaminase] [protein_id=YP_005237411.1] [location=1612621..1613547] gi\|204323107, gi... - gi\|204927765\|ref\|ZP_03218966.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serova... gi\|197242820, gi... - gi\|197264565\|ref\|ZP_03164639.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serova... GLSA_SALSV - Glutaminase OS=Salmonella schwarzengrund (strain CVM19633) GN=glsA PE=3 SV=1 GLSA_SALPA - Glutaminase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=glsA PE=3 SV=2 GLSA_SALPB - Glutaminase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glsA PE=3 SV=1 GLSA_SALPA - Glutaminase OS=Salmonella paratyphi A GN=glsA PE=3 SV=2 GLSA_SALTY - Glutaminase OS=Salmonella typhimurium GN=glsA PE=3 SV=1 gi\|168463051, gi... - gi\|195634528\|gb\|EDX52880.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar Ne... gi\|168260304, gi... - gi\|205350746\|gb\|EDZ37377.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar Ha... gi\|168241053, gi... - gi\|205339495\|gb\|EDZ26259.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar He... gi\|168235615, gi... - gi\|197291003\|gb\|EDY30356.1\| thermolabile glutaminase (Glutaminase A) [Salmonella enterica subsp. ent... gi\|194458323, gi... - gi\|194471959\|ref\|ZP_03077943.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serova... GLSA_SALHS - Glutaminase OS=Salmonella heidelberg (strain SL476) GN=glsA PE=3 SV=1 GLSA_SALNS - Glutaminase OS=Salmonella newport (strain SL254) GN=glsA PE=3 SV=1 gi\|205343841, gi... - gi\|205343841\|gb\|EDZ30605.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar We... gi\|168229913, gi... - gi\|205335252\|gb\|EDZ22016.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar Ke... gi\|167992868, gi... - gi\|205328926\|gb\|EDZ15690.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar 4,... gi\|205324992, gi... - gi\|205324992\|gb\|EDZ12831.1\| thermolabile glutaminase [Salmonella enterica subsp. enterica serovar Sa... GLSA_SALTY - Glutaminase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=glsA PE=3 SV=1 GLSA_SALPB - Glutaminase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=glsA PE=3 SV=1 GLSA_SALTY, GLS2... - Glutaminase OS=Salmonella typhimurium GN=glsA PE=3 SV=1, (Q8ZPI2) Probable glutaminase yneH (EC 3.5....	0.0	[1..308]	[1..308]
gi\|238798796, gi... - gi\|77961507\|ref\|ZP_00825343.1\| COG2066: Glutaminase [Yersinia mollaretii ATCC 43969], gi\|238798796\|r...	0.0	[2..308]	[9..315]
EG13816 - glutaminase 2 / Glutaminase 2; GlsA2 gi\|115512869, gi... - gi\|117623745\|ref\|YP_852658.1\| glutaminase [Escherichia coli APEC O1], gi\|115512869\|gb\|ABJ00944.1\| pu... gi\|124530904, gi... - gi\|124530904\|ref\|ZP_01701382.1\| Glutaminase [Escherichia coli B], gi\|124498903\|gb\|EAY46403.1\| Glutam... gi\|168768939, gi... - gi\|189361959\|gb\|EDU80378.1\| glutaminase [Escherichia coli O157:H7 str. EC4486], gi\|168768939\|ref\|ZP_... gi\|189368145, gi... - gi\|189368145\|gb\|EDU86561.1\| glutaminase [Escherichia coli O157:H7 str. EC4501], gi\|168761381\|ref\|ZP_... gi\|168781503, gi... - gi\|189000925\|gb\|EDU69911.1\| glutaminase [Escherichia coli O157:H7 str. EC4076], gi\|168781503\|ref\|ZP_... gi\|187770121, gi... - gi\|187770121\|gb\|EDU33965.1\| glutaminase [Escherichia coli O157:H7 str. EC4196], gi\|168774240\|ref\|ZP_... gi\|168799342, gi... - gi\|189378122\|gb\|EDU96538.1\| glutaminase [Escherichia coli O157:H7 str. EC508], gi\|168799342\|ref\|ZP_0... gi\|168788416, gi... - gi\|189371798\|gb\|EDU90214.1\| glutaminase [Escherichia coli O157:H7 str. EC869], gi\|168788416\|ref\|ZP_0... gi\|169889026, gi... - gi\|170081191\|ref\|YP_001730511.1\| glutaminase [Escherichia coli str. K-12 substr. DH10B], gi\|16988902... gi\|169755075, gi... - gi\|170020147\|ref\|YP_001725101.1\| glutaminase [Escherichia coli ATCC 8739], gi\|169755075\|gb\|ACA77774.... gi\|168756172, gi... - gi\|189356664\|gb\|EDU75083.1\| glutaminase [Escherichia coli O157:H7 str. EC4401], gi\|168756172\|ref\|ZP_... gi\|168748871, gi... - gi\|188016724\|gb\|EDU54846.1\| glutaminase [Escherichia coli O157:H7 str. EC4113], gi\|168748871\|ref\|ZP_... gi\|215486737, gi... - gi\|215486737\|ref\|YP_002329168.1\| glutaminase [Escherichia coli O127:H6 str. E2348/69], gi\|215264809\|... gi\|209912064, gi... - gi\|209918805\|ref\|YP_002292889.1\| glutaminase [Escherichia coli SE11], gi\|209912064\|dbj\|BAG77138.1\| p... gi\|218360826, gi... - gi\|218554058\|ref\|YP_002386971.1\| glutaminase [Escherichia coli IAI1], gi\|218360826\|emb\|CAQ98393.1\| p... gi\|217329402, gi... - gi\|217329402\|ref\|ZP_03445482.1\| glutaminase [Escherichia coli O157:H7 str. TW14588], gi\|217317841\|gb... gi\|218351794, gi... - gi\|218695062\|ref\|YP_002402729.1\| glutaminase [Escherichia coli 55989], gi\|218351794\|emb\|CAU97510.1\| ... gi\|218558427, gi... - gi\|218558427\|ref\|YP_002391340.1\| glutaminase [Escherichia coli S88], gi\|218365196\|emb\|CAR02916.1\| pu... gi\|157160996, gi... - gi\|157160996\|ref\|YP_001458314.1\| glutaminase [Escherichia coli HS], gi\|157066676\|gb\|ABV05931.1\| glut... gi\|218370131, gi... - gi\|218700145\|ref\|YP_002407774.1\| glutaminase [Escherichia coli IAI39], gi\|218370131\|emb\|CAR17919.1\| ... gi\|110343278, gi... - gi\|110641686\|ref\|YP_669416.1\| glutaminase [Escherichia coli 536], gi\|110343278\|gb\|ABG69515.1\| probab... gi\|192929075, gi... - gi\|193064227\|ref\|ZP_03045310.1\| glutaminase [Escherichia coli E22], gi\|192929075\|gb\|EDV82686.1\| glut... gi\|170683424, gi... - gi\|170683424\|ref\|YP_001743702.1\| glutaminase [Escherichia coli SMS-3-5], gi\|170521142\|gb\|ACB19320.1\|... gi\|188493213, gi... - gi\|75512524\|ref\|ZP_00735047.1\| COG2066: Glutaminase [Escherichia coli 53638], gi\|188493213\|ref\|ZP_03... gi\|195937016 - gi\|195937016\|ref\|ZP_03082398.1\| glutaminase [Escherichia coli O157:H7 str. EC4024] gi\|74312118, gi\|... - gi\|74312118\|ref\|YP_310537.1\| glutaminase [Shigella sonnei Ss046], gi\|73855595\|gb\|AAZ88302.1\| putativ... gi\|194436476, gi... - gi\|194436476\|ref\|ZP_03068577.1\| glutaminase [Escherichia coli 101-1], gi\|194424508\|gb\|EDX40494.1\| gl... gi\|208732345, gi... - gi\|208815697\|ref\|ZP_03256876.1\| glutaminase [Escherichia coli O157:H7 str. EC4045], gi\|208732345\|gb\|... gi\|1742497, gi\|8... - gi\|89108365\|ref\|AP_002145.1\| predicted glutaminase [Escherichia coli str. K-12 substr. W3110], gi\|17... gi\|208811065, gi... - gi\|208811065\|ref\|ZP_03252898.1\| glutaminase [Escherichia coli O157:H7 str. EC4206], gi\|208724571\|gb\|... gi\|91210766, gi\|... - gi\|91210766\|ref\|YP_540752.1\| glutaminase [Escherichia coli UTI89], gi\|91072340\|gb\|ABE07221.1\| putati... gi\|209159214, gi... - gi\|209397814\|ref\|YP_002270523.1\| glutaminase [Escherichia coli O157:H7 str. EC4115], gi\|209159214\|gb... gi\|13361597, gi\|... - gi\|15831385\|ref\|NP_310158.1\| glutaminase [Escherichia coli O157:H7 str. Sakai], gi\|13361597\|dbj\|BAB3... gi\|208739273, gi... - gi\|208819150\|ref\|ZP_03259470.1\| glutaminase [Escherichia coli O157:H7 str. EC4042], gi\|208739273\|gb\|... gi\|187428291, gi... - gi\|75178598\|ref\|ZP_00698644.1\| COG2066: Glutaminase [Shigella boydii BS512], gi\|187731299\|ref\|YP_001... gi\|190905552, gi... - gi\|75237136\|ref\|ZP_00721186.1\| COG2066: Glutaminase [Escherichia coli F11], gi\|191174134\|ref\|ZP_0303... gi\|192959771, gi... - gi\|75239845\|ref\|ZP_00723806.1\| COG2066: Glutaminase [Escherichia coli E110019], gi\|193067181\|ref\|ZP_... gi\|194415967, gi... - gi\|75212893\|ref\|ZP_00712891.1\| COG2066: Glutaminase [Escherichia coli B171], gi\|194425912\|ref\|ZP_030... gi\|226900251, gi... - gi\|237705494\|ref\|ZP_04535975.1\| glutaminase [Escherichia sp. 3_2_53FAA], gi\|226900251\|gb\|EEH86510.1\|... gi\|191165113, gi... - gi\|75231718\|ref\|ZP_00718059.1\| COG2066: Glutaminase [Escherichia coli B7A], gi\|191165113\|ref\|ZP_0302... gi\|238900744, gi... - gi\|238900744\|ref\|YP_002926540.1\| putative glutaminase [Escherichia coli BW2952], gi\|238862433\|gb\|ACR... gi\|157157228, gi... - gi\|157157228\|ref\|YP_001462809.1\| glutaminase [Escherichia coli E24377A], gi\|157079258\|gb\|ABV18966.1\|... gi\|254793070, gi... - gi\|254793070\|ref\|YP_003077907.1\| predicted glutaminase [Escherichia coli O157:H7 str. TW14359], gi\|2... GLSA2_ECOL6 - Glutaminase 2 OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=glsA2 PE=3 SV=1 GLSA2_ECOL6 - Glutaminase 2 OS=Escherichia coli O6 GN=glsA2 PE=3 SV=1 EG13816 - glutaminase 2 / Glutaminase 2; GlsA2 GLSA2_ECO57 - Glutaminase 2 OS=Escherichia coli O157:H7 GN=glsA2 PE=3 SV=1 gi\|15801612, gi\|... - gi\|15801612\|ref\|NP_287629.1\| glutaminase [Escherichia coli O157:H7 EDL933], gi\|12515138\|gb\|AAG56241.... GLS2_ECOLI, GLSA... - Glutaminase 2 (EC 3.5.1.2) - Escherichia coli, (P77470) Probable glutaminase yneH (EC 3.5.1.2)	0.0	[1..308]	[1..308]
GLSA_SALEP - Glutaminase OS=Salmonella enteritidis PT4 (strain P125109) GN=glsA PE=3 SV=1 GLSA_SALCH - Glutaminase OS=Salmonella choleraesuis GN=glsA PE=3 SV=1 GLSA_SALG2 - Glutaminase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=glsA PE=3 SV=1 GLSA_SALCH - Glutaminase OS=Salmonella choleraesuis GN=glsA PE=3 SV=1 GLSA_SALCH - Glutaminase OS=Salmonella choleraesuis (strain SC-B67) GN=glsA PE=3 SV=1	0.0	[1..308]	[1..308]
gi\|91228694, gi\|... - gi\|91228694\|ref\|ZP_01262608.1\| glutaminase [Vibrio alginolyticus 12G01], gi\|91187765\|gb\|EAS74083.1\| ...	0.0	[9..308]	[7..306]
gi\|24112940, gi\|... - gi\|24112940\|ref\|NP_707450.1\| glutaminase [Shigella flexneri 2a str. 301], gi\|24051892\|gb\|AAN43157.1\|... gi\|30041322, gi\|... - gi\|30063073\|ref\|NP_837244.1\| glutaminase [Shigella flexneri 2a str. 2457T], gi\|30041322\|gb\|AAP17051.... GLSA2_SHIFL - Glutaminase 2 OS=Shigella flexneri GN=glsA2 PE=3 SV=1	0.0	[1..308]	[1..308]
gi\|254230232, gi... - gi\|254230232\|ref\|ZP_04923624.1\| glutaminase superfamily [Vibrio sp. Ex25], gi\|194538709\|ref\|YP_00207...	0.0	[9..308]	[7..306]
GLSA_SHIDS - Glutaminase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glsA PE=3 SV=1	0.0	[1..308]	[1..308]

Back

Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTTLDNALL NDILQQVRPL IGQGKVADYI PALAEVPANK LGIAVCTLDG QIFQAGDADE  60
   61 RFSIQSISKV LSLTLALSRY SEQDIWQRVG KEPSGQPFNS LVQLELEKGK PRNPFINLGA 120
  121 LVVCDMLQSR LSAPKQRLLE VVRQLVKDDS ISYDPRVARS EFEHSDRNAA IAYLMKSFGN 180
  181 FDNDVLTVLQ TYFHYCAMRM SCVELARCFV YLANQGRSIS GSESLITPMQ ARQINALMIT 240
  241 SGMYDGAGEF AFRVGMPGKS GVGGGIIAIV PDEFCIAVWS PELDHAGNSL AGTAALERLA 300
  301 QQMGRSIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	121.0
Match:	2pbyA
Description:	No description for 2pbyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits