YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166211182, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166211182, gi....

Description	E-value	Query Range	Subject Range
gi\|186698339, gi... - gi\|186895313\|ref\|YP_001872425.1\| haemin storage system, HmsS protein [Yersinia pseudotuberculosis PB... gi\|51596278, gi\|... - gi\|51596278\|ref\|YP_070469.1\| haemin storage system, HmsS protein [Yersinia pseudotuberculosis IP 329... Q66B28\|Q66B28_YERPS - Haemin storage system, HmsS protein - Yersinia pseudotuberculosis	8.0E-67	[1..155]	[1..155]
gi\|77380411, gi\|... - gi\|77456408\|ref\|YP_345913.1\| haemin storage system, HmsS protein [Pseudomonas fluorescens Pf0-1], gi...	1.0E-60	[5..153]	[3..158]
gi\|77963683 - gi\|77963683\|ref\|ZP_00827491.1\| hypothetical protein YmolA_01000096 [Yersinia mollaretii ATCC 43969]	3.0E-58	[1..155]	[1..155]
gi\|77959420 - gi\|77959420\|ref\|ZP_00823440.1\| hypothetical protein YberA_01000383 [Yersinia bercovieri ATCC 43970]	6.0E-58	[1..155]	[1..155]
gi\|77979813 - gi\|77979813\|ref\|ZP_00835229.1\| hypothetical protein YintA_01000308 [Yersinia intermedia ATCC 29909]	1.0E-57	[1..155]	[1..155]
gi\|77973223 - gi\|77973223\|ref\|ZP_00828773.1\| hypothetical protein YfreA_01002920 [Yersinia frederiksenii ATCC 3364...	2.0E-56	[1..155]	[1..155]
gi\|218364679, gi... - gi\|218557910\|ref\|YP_002390823.1\| putative inner membrane protein associated with biofilm formation [... gi\|91071687, gi\|... - gi\|91210113\|ref\|YP_540099.1\| hypothetical protein UTI89_C1084 [Escherichia coli UTI89], gi\|91071687\|... gi\|115512340, gi... - gi\|117623216\|ref\|YP_852129.1\| inner membrane protein [Escherichia coli APEC O1], gi\|115512340\|gb\|ABJ... gi\|26247045, gi\|... - gi\|26247045\|ref\|NP_753085.1\| hypothetical protein c1160 [Escherichia coli CFT073], gi\|26107445\|gb\|AA... gi\|237706993, gi... - gi\|237706993\|ref\|ZP_04537474.1\| inner membrane protein [Escherichia sp. 3_2_53FAA], gi\|226898203\|gb\|...	5.0E-49	[1..134]	[1..125]
EG13862 - biofilm PGA synthase PgaCD, regulatory subunit; c-di-GMP-stimulated activity and dimerization / Biof... PGAD_ECO57 - Biofilm PGA synthesis protein PgaD OS=Escherichia coli O157:H7 GN=pgaD PE=3 SV=1 gi\|15801012, gi\|... - gi\|15801012\|ref\|NP_287028.1\| hypothetical protein Z1523 [Escherichia coli O157:H7 EDL933], gi\|125143... gi\|157160545, gi... - gi\|157160545\|ref\|YP_001457863.1\| biofilm PGA synthesis protein PgaD [Escherichia coli HS], gi\|157066... gi\|157158963, gi... - gi\|157158963\|ref\|YP_001462255.1\| biofilm PGA synthesis protein PgaD [Escherichia coli E24377A], gi\|1... gi\|124500114, gi... - gi\|124529159\|ref\|ZP_01700269.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500114\|gb... gi\|189358165, gi... - gi\|189358165\|gb\|EDU76584.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC4401... gi\|168747355, gi... - gi\|188018012\|gb\|EDU56134.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC4113... gi\|170080678, gi... - gi\|170080678\|ref\|YP_001729998.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170020579, gi... - gi\|170020579\|ref\|YP_001725533.1\| hypothetical protein EcolC_2575 [Escherichia coli ATCC 8739], gi\|16... gi\|189001392, gi... - gi\|189001392\|gb\|EDU70378.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC4076... gi\|187770462, gi... - gi\|187770462\|gb\|EDU34306.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC4196... PGAD_ECOLI, YCDP... - (P75904) Hypothetical protein ycdP, Biofilm PGA synthesis protein pgaD - Escherichia coli gi\|217318942, gi... - gi\|217328515\|ref\|ZP_03444597.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. TW... gi\|209918277, gi... - gi\|209918277\|ref\|YP_002292361.1\| hypothetical protein ECSE_1086 [Escherichia coli SE11], gi\|20991153... gi\|209157946, gi... - gi\|209396546\|ref\|YP_002269748.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. E... gi\|208737917, gi... - gi\|208822432\|ref\|ZP_03262751.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC... gi\|238900279, gi... - gi\|238900279\|ref\|YP_002926075.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|218351289, gi... - gi\|218694557\|ref\|YP_002402224.1\| putative inner membrane protein associated with biofilm formation [... gi\|4062585, gi\|8... - gi\|89107870\|ref\|AP_001650.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|194413521, gi... - gi\|194428469\|ref\|ZP_03061009.1\| biofilm PGA synthesis protein PgaD [Escherichia coli B171], gi\|19441... gi\|254287941, gi... - gi\|254287941\|ref\|YP_003053689.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|15830521, gi\|... - gi\|15830521\|ref\|NP_309294.1\| hypothetical protein ECs1267 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|193070783, gi... - gi\|193070783\|ref\|ZP_03051717.1\| biofilm PGA synthesis protein PgaD [Escherichia coli E110019], gi\|19... gi\|251784559, gi... - gi\|251784559\|ref\|YP_002998863.1\| hypothetical protein B21_01030 [Escherichia coli BL21], gi\|24237683... gi\|110614583, gi... - gi\|110805035\|ref\|YP_688555.1\| hypothetical protein SFV_1032 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|192927777, gi... - gi\|193064525\|ref\|ZP_03045605.1\| biofilm PGA synthesis protein PgaD [Escherichia coli E22], gi\|192927... gi\|254792279, gi... - gi\|254792279\|ref\|YP_003077116.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... EG13862 - biofilm PGA synthase PgaCD, regulatory subunit; c-di-GMP-stimulated activity and dimerization / Biof... gi\|188488916, gi... - gi\|188493717\|ref\|ZP_03000987.1\| biofilm PGA synthesis protein PgaD [Escherichia coli 53638], gi\|1884... gi\|253973034, gi... - gi\|254161133\|ref\|YP_003044241.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|208731795, gi... - gi\|208815147\|ref\|ZP_03256326.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC... gi\|208806986, gi... - gi\|208806986\|ref\|ZP_03249323.1\| biofilm PGA synthesis protein PgaD [Escherichia coli O157:H7 str. EC... gi\|195935279 - gi\|195935279\|ref\|ZP_03080661.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] gi\|194438045, gi... - gi\|194438045\|ref\|ZP_03070138.1\| biofilm PGA synthesis protein PgaD [Escherichia coli 101-1], gi\|1944...	1.0E-48	[1..134]	[1..125]
gi\|110641204, gi... - gi\|110641204\|ref\|YP_668934.1\| hypothetical protein ECP_1020 [Escherichia coli 536], gi\|110342796\|gb\|... gi\|190907321, gi... - gi\|191172437\|ref\|ZP_03033978.1\| biofilm PGA synthesis protein PgaD [Escherichia coli F11], gi\|190907...	6.0E-48	[1..134]	[1..125]
gi\|70733671, gi\|... - gi\|70733671\|ref\|YP_257311.1\| hypothetical protein PFL_0164 [Pseudomonas fluorescens Pf-5], gi\|683479...	1.0E-33	[5..153]	[3..162]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTPLIFTEQ RLLPRWIDII ITALAWFGFV FLLVRGFLEM ISRAPHMGPI PLRIYILSGL  60
   61 TTIALYLAIA AFNAVVLIIW AKYNQVRFQV ERRGHRPDLD DDELASSMAL SPELIAQLKS 120
  121 GSCLTLYNDE HGHLLDVKEG LQLPEVAPVI HLRQG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits