YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|218350565, gi...
Organism:	Escherichia coli 55989
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|218350565, gi....

Description	E-value	Query Range	Subject Range
gi\|75189443 - gi\|75189443\|ref\|ZP_00702710.1\| COG2186: Transcriptional regulators [Escherichia coli E24377A] gi\|218430752, gi... - gi\|218703655\|ref\|YP_002411174.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM... gi\|218698722, gi... - gi\|218698722\|ref\|YP_002406351.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218552934, gi... - gi\|218552934\|ref\|YP_002385847.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|209910844, gi... - gi\|209917585\|ref\|YP_002291669.1\| putative DNA-binding transcriptional regulator [Escherichia coli SE...	431.0	[0..1]	[222..1]
gi\|75209932 - gi\|75209932\|ref\|ZP_00710121.1\| COG2186: Transcriptional regulators [Escherichia coli B171]	430.0	[0..1]	[222..1]
gi\|26246374, gi\|... - gi\|26246374\|ref\|NP_752413.1\| putative DNA-binding transcriptional regulator [Escherichia coli CFT073... gi\|237707639, gi... - gi\|237707639\|ref\|ZP_04538120.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227884624, gi... - gi\|227884624\|ref\|ZP_04002429.1\| DNA-binding transcriptional regulator [Escherichia coli 83972], gi\|2... gi\|218557284, gi... - gi\|218557284\|ref\|YP_002390197.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... gi\|91209436, gi\|... - gi\|91209436\|ref\|YP_539422.1\| putative DNA-binding transcriptional regulator [Escherichia coli UTI89]... gi\|117622638, gi... - gi\|117622638\|ref\|YP_851551.1\| putative DNA-binding transcriptional regulator [Escherichia coli APEC ...	429.0	[0..1]	[222..1]
gi\|81244277, gi\|... - gi\|82542866\|ref\|YP_406813.1\| putative DNA-binding transcriptional regulator [Shigella boydii Sb227],...	423.0	[0..1]	[222..1]
gi\|110640636, gi... - gi\|110640636\|ref\|YP_668364.1\| putative DNA-binding transcriptional regulator [Escherichia coli 536],... gi\|190906210, gi... - gi\|191173501\|ref\|ZP_03035028.1\| hypothetical protein EcF11_1702 [Escherichia coli F11], gi\|190906210...	397.0	[0..16]	[222..1]
gi\|161615449, gi... - gi\|161615449\|ref\|YP_001589414.1\| putative DNA-binding transcriptional regulator [Salmonella enterica... gi\|206707659, gi... - gi\|207855856\|ref\|YP_002242507.1\| putative DNA-binding transcriptional regulator [Salmonella enterica... lcl\|NC_016856.1_... - [gene=yaiV] [protein=putative DNA-binding transcriptional regulator] [protein_id=YP_005236055.1] [lo... gi\|16418876, gi\|... - gi\|16763754\|ref\|NP_459369.1\| putative DNA-binding transcriptional regulator [Salmonella typhimurium ... gi\|62178985, gi\|... - gi\|62178985\|ref\|YP_215402.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub... gi\|238911493 - gi\|238911493\|ref\|ZP_04655330.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ...	359.0	[0..16]	[222..1]
gi\|213161238 - gi\|213161238\|ref\|ZP_03346948.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|197363391, gi... - gi\|197363391\|ref\|YP_002143028.1\| putative DNA-binding transcriptional regulator [Salmonella enterica... gi\|213647655 - gi\|213647655\|ref\|ZP_03377708.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|25359147, gi\|... - gi\|25359147\|pir\|\|AE0548 conserved hypothetical protein STY0406 [imported] - Salmonella enterica subs... gi\|213615909 - gi\|213615909\|ref\|ZP_03371735.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|213581931 - gi\|213581931\|ref\|ZP_03363757.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|213425183 - gi\|213425183\|ref\|ZP_03357933.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|29142876, gi\|... - gi\|29142876\|ref\|NP_806218.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub... gi\|214002263 - gi\|214002263\|ref\|ZP_03412998.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|16759352 - gi\|16759352\|ref\|NP_454969.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub... gi\|213854621 - gi\|213854621\|ref\|ZP_03382861.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ... gi\|56128727, gi\|... - gi\|56414470\|ref\|YP_151545.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub...	356.0	[0..16]	[222..1]
gi\|24111683, gi\|... - gi\|24111683\|ref\|NP_706193.1\| hypothetical protein SF0238 [Shigella flexneri 2a str. 301], gi\|2405046... gi\|110613944, gi... - gi\|110804396\|ref\|YP_687916.1\| hypothetical protein SFV_0338 [Shigella flexneri 5 str. 8401], gi\|1106...	343.0	[0..1]	[222..1]
gi\|56126551, gi\|... - gi\|56412294\|ref\|YP_149369.1\| hypothetical protein SPA0020 [Salmonella enterica subsp. enterica serov... gi\|197361231, gi... - gi\|197361231\|ref\|YP_002140866.1\| hypothetical protein SSPA0018 [Salmonella enterica subsp. enterica ...	270.0	[0..50]	[222..55]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVKDLTGIT AKDAQMLSVV KPLQEFGKLD KCLSRYGTRF EFNNEKQVIF SSDVNNEDTF  60
   61 VILEGVISLR REENVLIGIT QAPYIMGLAD GLMKNDIPYK LISEGNCTGY HLPAKQTITL 120
  121 IEQNQLWRDA FYWLAWQNRI LELRDVQLIG HNSYEQIRAT LLSMIDWNEE LRSRIGVMNY 180
  181 IHQRTRISRS VVAEVLAALR KGGYIEMNKG KLVAINRLPS EY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.65
Match:	1zybA
Description:	Crystal structure of transcription regulator from Bacteriodes thetaiotaomicron VPI-5482 at 2.15 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits