YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170021588, gi...
Organism:	Escherichia coli ATCC 8739
Length:	784 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170021588, gi....

Description	E-value	Query Range	Subject Range
LPTD_SHIBS - LPS-assembly protein LptD OS=Shigella boydii serotype 4 (strain Sb227) GN=lptD PE=3 SV=1 LPTD_SHISS - LPS-assembly protein LptD OS=Shigella sonnei (strain Ss046) GN=lptD PE=3 SV=1	787.0	[0..1]	[784..1]
LPTD_ECOUT - LPS-assembly protein LptD OS=Escherichia coli (strain UTI89 / UPEC) GN=lptD PE=3 SV=1 LPTD_ECOL6, OSTA... - LPS-assembly protein OS=Escherichia coli O6 GN=imp PE=3 SV=1, LPS-assembly protein lptD OS=Escherich... LPTD_ECOK1 - LPS-assembly protein LptD OS=Escherichia coli O1:K1 / APEC GN=lptD PE=3 SV=1 gi\|226902112, gi... - gi\|237704200\|ref\|ZP_04534681.1\| organic solvent tolerance protein [Escherichia sp. 3_2_53FAA], gi\|22... LPTD_ECOL6 - LPS-assembly protein LptD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lptD PE=... gi\|227837874, gi... - gi\|227885045\|ref\|ZP_04002850.1\| organic solvent tolerance protein [Escherichia coli 83972], gi\|22783... gi\|218363764, gi... - gi\|218556995\|ref\|YP_002389908.1\| organic solvent tolerance protein [Escherichia coli S88], gi\|218363... gi\|218687932, gi... - gi\|218687932\|ref\|YP_002396144.1\| organic solvent tolerance protein [Escherichia coli ED1a], gi\|21842...	784.0	[0..1]	[784..1]
LPTD_ECOL5 - LPS-assembly protein LptD OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lptD PE=3 SV=1	784.0	[0..1]	[784..1]
gi\|213427536 - gi\|213427536\|ref\|ZP_03360286.1\| organic solvent tolerance protein [Salmonella enterica subsp. enteri... gi\|214001246 - gi\|214001246\|ref\|ZP_03411981.1\| organic solvent tolerance protein [Salmonella enterica subsp. enteri... gi\|16759088 - gi\|16759088\|ref\|NP_454705.1\| organic solvent tolerance protein [Salmonella enterica subsp. enterica ... LPTD_SALTI - LPS-assembly protein LptD OS=Salmonella typhi GN=lptD PE=3 SV=1 OSTA_SALTI - LPS-assembly protein OS=Salmonella typhi GN=imp PE=3 SV=1 gi\|29136262, gi\|... - gi\|29140638\|ref\|NP_803980.1\| organic solvent tolerance protein [Salmonella enterica subsp. enterica ...	783.0	[0..1]	[783..1]
LPTD_SHIDS - LPS-assembly protein LptD OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=lptD PE=3 SV=1	782.0	[0..1]	[784..1]
LPTD_SALPA, OSTA... - LPS-assembly protein OS=Salmonella paratyphi A GN=imp PE=3 SV=1, LPS-assembly protein lptD OS=Salmon... LPTD_SALPA - LPS-assembly protein LptD OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lptD PE=3 SV=1 gi\|197092776, gi... - gi\|197361301\|ref\|YP_002140936.1\| organic solvent tolerance protein [Salmonella enterica subsp. enter...	782.0	[0..1]	[783..1]
gi\|195937730 - gi\|195937730\|ref\|ZP_03083112.1\| organic solvent tolerance protein [Escherichia coli O157:H7 str. EC4... LPTD_ECO57 - LPS-assembly protein LptD OS=Escherichia coli O157:H7 GN=lptD PE=3 SV=1 gi\|217325810, gi... - gi\|217325810\|ref\|ZP_03441894.1\| LPS-assembly protein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|15799739, gi\|... - gi\|15799739\|ref\|NP_285751.1\| organic solvent tolerance protein [Escherichia coli O157:H7 EDL933], gi... gi\|168766749, gi... - gi\|189364028\|gb\|EDU82447.1\| LPS-assembly protein [Escherichia coli O157:H7 str. EC4486], gi\|16876674... gi\|254791193, gi... - gi\|254791193\|ref\|YP_003076030.1\| exported protein required for envelope biosynthesis and integrity [... gi\|209748708, gi... - pir\|\|C85487 organic solvent tolerance [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168785112, gi... - gi\|189375085\|gb\|EDU93501.1\| LPS-assembly protein [Escherichia coli O157:H7 str. EC869], gi\|168785112... gi\|15829313, gi\|... - gi\|15829313\|ref\|NP_308086.1\| organic solvent tolerance protein [Escherichia coli O157:H7 str. Sakai]...	780.0	[0..1]	[784..1]
LPTD_SHIFL - LPS-assembly protein LptD OS=Shigella flexneri GN=lptD PE=1 SV=1 gi\|30039863, gi\|... - gi\|30061621\|ref\|NP_835792.1\| organic solvent tolerance protein [Shigella flexneri 2a str. 2457T], gi... gi\|24050253, gi\|... - gi\|24111500\|ref\|NP_706010.1\| organic solvent tolerance protein [Shigella flexneri 2a str. 301], gi\|2...	778.0	[0..1]	[784..1]
gi\|167550724, gi... - gi\|205324339\|gb\|EDZ12178.1\| LPS-assembly protein [Salmonella enterica subsp. enterica serovar Saintp... gi\|205337498, gi... - gi\|205337498\|gb\|EDZ24262.1\| LPS-assembly protein [Salmonella enterica subsp. enterica serovar Heidel... LPTD_SALTY - LPS-assembly protein LptD OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lptD PE... OSTA_SALTY - LPS-assembly protein OS=Salmonella typhimurium GN=imp PE=3 SV=1 LPTD_SALTY - LPS-assembly protein lptD OS=Salmonella typhimurium GN=lptD PE=3 SV=1 gi\|194450910, gi... - gi\|194450910\|ref\|YP_002044061.1\| organic solvent tolerance protein [Salmonella enterica subsp. enter... gi\|197265948, gi... - gi\|197265948\|ref\|ZP_03166022.1\| LPS-assembly protein [Salmonella enterica subsp. enterica serovar Sa...	777.0	[0..1]	[783..1]
LPTD_SHIF8 - LPS-assembly protein LptD OS=Shigella flexneri serotype 5b (strain 8401) GN=lptD PE=3 SV=1	777.0	[0..1]	[784..1]

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Predicted Domain #1

Region A:
Residues: [1-784]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRIPTLLA TMIATALYSQ QGLAADLASQ CMLGVPSYDR PLVQGDTNDL PVTINADHAK  60
   61 GDYPDDAVFT GSVDIMQGNS RLQADEVQLH QKEAPGQPEP VRTVDALGNV HYDDNQVILK 120
  121 GPKGWANLNT KDTNVWEGDY QMVGRQGRGK ADLMKQRGEN RYTILDNGSF TSCLPGSDTW 180
  181 SVVGSEIIHD REEQVAEIWN ARFKVGPVPI FYSPYLQLPV GDKRRSGFLI PNAKYTTTNY 240
  241 FEFYLPYYWN IAPNMDATIT PHYMHRRGNI MWENEFRYLS QAGAGLMELD YLPSDKVYED 300
  301 EHPNDDSSRR WLFYWNHSGV MDQVWRFNVD YTKVSDPSYF NDFDNKYGSS TDGYATQKFS 360
  361 VGYAVQNFNA TVSTKQFQVF SEQNTSSYSA EPQLDVNYYQ NDVGPFDTRI YGQAVHFVNT 420
  421 RDDMPEATRV HLEPTINLPL SNNWGSINTE AKLLATHYQQ TNLDWYNSRN TTKLDESVNR 480
  481 VMPQFKVDGK MVFERDMEML APGYTQTLEP RAQYLYVPYR DQSDIYNYDS SLLQSDYSGL 540
  541 FRDRTYGGLD RIASANQVTT GVTSRIYDDA AVERFNISVG QIYYFTESRT GDDNITWEND 600
  601 DKTGSLVWAG DTYWRISERW GLRGGIQYDT RLDNVATSNS SIEYRRDEDR LVQLNYRYAS 660
  661 PEYIQATLPK YYSTAEQYKN GISQVGAVAS WPIADRWSIV GAYYYDTNAN KQADSMLGVQ 720
  721 YSSCCYAIRV GYERKLNGWD NDKQHAVYDN AIGFNIELRG LSSNYGLGTQ EMLRSNILPY 780
  781 QNTL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	1qffA
Description:	Ferric hydroxamate uptake receptor FhuA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits