YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166208224, gi...
Organism:	Yersinia pestis biovar Antiqua str. B42003004
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166208224, gi....

Description	E-value	Query Range	Subject Range
gi\|37525839, gi\|... - gi\|37525839\|ref\|NP_929183.1\| flagellar basal body rod protein FlgC [Photorhabdus luminescens subsp. ...	8.0E-28	[1..134]	[1..134]
gi\|83572535, gi\|... - gi\|83589621\|ref\|YP_429630.1\| flagellar basal-body rod protein FlgC [Moorella thermoacetica ATCC 3907...	4.0E-27	[1..134]	[1..145]
gi\|89210115, gi\|... - gi\|89210115\|ref\|ZP_01188507.1\| Flagellar basal-body rod protein FlgC [Halothermothrix orenii H 168],...	7.0E-27	[3..134]	[1..144]
gi\|218249308, gi... - gi\|218249308\|ref\|YP_002374816.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi ZS7], g... gi\|221217671, gi... - gi\|221217671\|ref\|ZP_03589139.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 72a], gi... gi\|223888936, gi... - gi\|223888936\|ref\|ZP_03623527.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 64b], gi... gi\|224533191, gi... - gi\|224533191\|ref\|ZP_03673791.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi WI91-23]... gi\|225370268, gi... - gi\|225549042\|ref\|ZP_03770017.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 94a], gi... gi\|195941353 - gi\|195941353\|ref\|ZP_03086735.1\| flagellar basal body rod protein FlgC [Borrelia burgdorferi 80a] gi\|226234013, gi... - gi\|226320594\|ref\|ZP_03796154.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 29805], ... gi\|216264936, gi... - gi\|216264936\|ref\|ZP_03436928.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 156a], g... FLGC_BORBU - Flagellar basal-body rod protein FlgC OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 ... gi\|225550067, gi... - gi\|225550067\|ref\|ZP_03771027.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi 118a], g... gi\|224533682, gi... - gi\|224533682\|ref\|ZP_03674270.1\| flagellar basal-body rod protein FlgC [Borrelia burgdorferi CA-11.2a... FLGC_BORBU - Flagellar basal-body rod protein flgC OS=Borrelia burgdorferi GN=flgC PE=3 SV=1	8.0E-27	[1..134]	[1..151]
gi\|110890392, gi... - gi\|111115118\|ref\|YP_709736.1\| flagellar basal body rod protein FlgC [Borrelia afzelii PKo], gi\|11089...	8.0E-27	[1..134]	[1..151]
gi\|67154556 - gi\|67154556\|ref\|ZP_00416301.1\| Flagellar basal-body rod protein FlgC [Azotobacter vinelandii AvOP] gi\|67154556, gi\|... - gi\|67154556\|ref\|ZP_00416301.1\| Flagellar basal-body rod protein FlgC [Azotobacter vinelandii AvOP], ...	2.0E-26	[1..133]	[1..133]
gi\|56419752, gi\|... - gi\|56419752\|ref\|YP_147070.1\| flagellar basal body rod protein FlgC [Geobacillus kaustophilus HTA426]...	2.0E-26	[1..134]	[1..150]
gi\|51573124, gi\|... - gi\|51598553\|ref\|YP_072741.1\| flagellar basal body rod protein FlgC [Borrelia garinii PBi], gi\|515731...	4.0E-26	[1..134]	[1..151]
gi\|166854572, gi... - gi\|167040332\|ref\|YP_001663317.1\| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X514]... gi\|241903050, gi... - gi\|241903050\|ref\|ZP_04787779.1\| flagellar basal-body rod protein FlgC [Thermoanaerobacter brockii su... gi\|242231932, gi... - gi\|242256559\|ref\|ZP_04801448.1\| flagellar basal-body rod protein FlgC [Thermoanaerobacter sp. X513],... gi\|76588178, gi\|... - gi\|76796414\|ref\|ZP_00778776.1\| Flagellar basal-body rod protein FlgC [Thermoanaerobacter ethanolicus...	1.0E-25	[1..134]	[1..146]
gi\|1857438 - gi\|1857438\|gb\|AAC45656.1\| FlgC [Proteus mirabilis]	1.0E-25	[1..134]	[1..134]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLNIFDIA GSALSAQSQR MNVSASNLAN ADSVTGPDGQ PYRAKQVVFQ VAAQPGQETG  60
   61 GVRVAQIVDD PSPDRLVYQP GNPLADAKGY VRMPNVDVTG EMVNTISASR SYQANVEVLN 120
  121 TTKSLMLKTL TLGQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits