YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224503728
Organism:	Listeria monocytogenes FSL R2-561
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224503728.

Description	E-value	Query Range	Subject Range
gi\|75676842, gi\|... - gi\|75676842\|ref\|YP_319263.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter winogra...	89.0	[0..1]	[90..3]
gi\|91799480, gi\|... - gi\|92116586\|ref\|YP_576315.1\| putative monovalent cation/H+ antiporter subunit F [Nitrobacter hamburg...	89.0	[0..1]	[90..3]
gi\|25522150, gi\|... - pir\|\|AB2689 Na+/H+ antiporter mnhF [imported] - Agrobacterium tumefaciens (strain C58, Dupont), pir... gi\|15155908, gi\|... - gi\|17934822\|ref\|NP_531612.1\| Na+/H+ antiporter [Agrobacterium tumefaciens str. C58], gi\|17739294\|gb\|...	88.0	[0..1]	[93..5]
gi\|85698762, gi\|... - gi\|85714315\|ref\|ZP_01045303.1\| potassium efflux system protein [Nitrobacter sp. Nb-311A], gi\|8569876...	88.0	[0..2]	[90..4]
gi\|84712334, gi\|... - gi\|84712334\|ref\|ZP_01020246.1\| protein F of Na+/H+ antiporter of putative pH adaptation potassium ef...	87.0	[0..2]	[90..4]
gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g... gi\|90336904, gi\|... - gi\|90418824\|ref\|ZP_01226735.1\| putative Na+/H+ antiporter [Aurantimonas sp. SI85-9A1], gi\|90336904\|g...	86.0	[0..2]	[93..10]
gi\|25493477 - pir\|\|B83814 Na+/H+ antiporter BH1314 [imported] - Bacillus halodurans (strain C-125) gi\|15613877, gi\|... - gi\|15613877\|ref\|NP_242180.1\| putative monovalent cation/H+ antiporter subunit F [Bacillus halodurans...	86.0	[0..2]	[95..1]
gi\|33574042 - gi\|33574042\|emb\|CAE38365.1\| pH adaptation potassium efflux system protein F [Bordetella parapertussi... gi\|33597614 - gi\|33597614\|ref\|NP_885257.1\| putative monovalent cation/H+ antiporter subunit F [Bordetella parapert... gi\|33602017, gi\|... - gi\|33602017\|ref\|NP_889577.1\| putative monovalent cation/H+ antiporter subunit F [Bordetella bronchis... gi\|33572416, gi\|... - gi\|33592768\|ref\|NP_880412.1\| putative monovalent cation/H+ antiporter subunit F [Bordetella pertussi...	85.0	[0..1]	[90..4]
gi\|46203027 - gi\|46203027\|ref\|ZP_00208765.1\| COG2212: Multisubunit Na+/H+ antiporter, MnhF subunit [Magnetospirill...	85.0	[0..2]	[90..6]
gi\|192285257, gi... - gi\|192291508\|ref\|YP_001992113.1\| multiple resistance and pH regulation protein F [Rhodopseudomonas p... phaF - phaF pH adaptation potassium efflux system phaF 3168523:3168804 forward MW:10011	85.0	[0..1]	[90..4]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIQIALSIG LLLYSISTFL YLYRILKGPT TSDKVVALDS IGMNLVAIVA LLSMFYDTHA  60
   61 FLDVILLIAL LAFIGTVSFA KFIEKGKVID RERDN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.431798
Match:	PF04066.4
Description:	No description for PF04066.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits