YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|167048206, gi...
Organism:	Yersinia pestis biovar Antiqua str. UG05-0454
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|167048206, gi....

Description	E-value	Query Range	Subject Range
gi\|50119177, gi\|... - gi\|50119177\|ref\|YP_048344.1\| preprotein translocase subunit SecE [Pectobacterium atrosepticum SCRI10...	4.0E-30	[1..127]	[1..127]
gi\|238713529, gi... - gi\|77957018\|ref\|ZP_00821087.1\| COG0690: Preprotein translocase subunit SecE [Yersinia bercovieri ATC... gi\|77960658 - gi\|77960658\|ref\|ZP_00824520.1\| COG0690: Preprotein translocase subunit SecE [Yersinia mollaretii ATC... gi\|238760250, gi... - gi\|238760250\|ref\|ZP_04621394.1\| Preprotein translocase subunit secE [Yersinia aldovae ATCC 35236], g... gi\|122087630, gi... - gi\|123440669\|ref\|YP_001004662.1\| preprotein translocase subunit SecE [Yersinia enterocolitica subsp.... gi\|77972255 - gi\|77972255\|ref\|ZP_00827827.1\| COG0690: Preprotein translocase subunit SecE [Yersinia frederiksenii ...	9.0E-30	[1..127]	[1..127]
gi\|77977798, gi\|... - gi\|77977798\|ref\|ZP_00833238.1\| COG0690: Preprotein translocase subunit SecE [Yersinia intermedia ATC...	1.0E-29	[1..127]	[1..127]
gi\|37524442, gi\|... - gi\|37524442\|ref\|NP_927786.1\| preprotein translocase subunit SecE [Photorhabdus luminescens subsp. la...	2.0E-29	[1..127]	[1..127]
gi\|21957174, gi\|... - gi\|22124393\|ref\|NP_667816.1\| translocase [Yersinia pestis KIM], gi\|21957174\|gb\|AAM84067.1\|AE013648_9... gi\|45437736, gi\|... - gi\|45442870\|ref\|NP_994409.1\| translocase [Yersinia pestis biovar Microtus str. 91001], gi\|45437736\|g...	6.0E-29	[1..127]	[6..132]
SECE_SALTI - Preprotein translocase subunit secE OS=Salmonella typhi GN=secE PE=3 SV=1 SECE_SALTI - Protein translocase subunit SecE OS=Salmonella typhi GN=secE PE=3 SV=1 gi\|16762306 - gi\|16762306\|ref\|NP_457923.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... SECE_SALTY - Protein translocase subunit SecE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|29139429, gi\|... - gi\|29143794\|ref\|NP_807136.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... gi\|214001615 - gi\|214001615\|ref\|ZP_03412350.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213852741 - gi\|213852741\|ref\|ZP_03382273.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213650882 - gi\|213650882\|ref\|ZP_03380935.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213623115 - gi\|213623115\|ref\|ZP_03375898.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|224585689, gi... - gi\|224585689\|ref\|YP_002639488.1\| translocase [Salmonella enterica subsp. enterica serovar Paratyphi ... SECE_SALTY - Preprotein translocase subunit secE OS=Salmonella typhimurium GN=secE PE=3 SV=1 lcl\|NC_016856.1_... - [gene=secE] [protein=preprotein translocase subunit SecE] [protein_id=YP_005240426.1] [location=4375... gi\|161366647, gi... - gi\|161617283\|ref\|YP_001591248.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|161505372, gi... - gi\|161505372\|ref\|YP_001572484.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ari... gi\|207859325, gi... - gi\|207859325\|ref\|YP_002245976.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|205274231, gi... - gi\|205354450\|ref\|YP_002228251.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|238913726 - gi\|238913726\|ref\|ZP_04657563.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... SECE_SALTY - Preprotein translocase subunit secE OS=Salmonella typhimurium GN=secE PE=3 SV=1 gi\|199603894, gi... - gi\|200386796\|ref\|ZP_03213408.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ente... gi\|197937067, gi... - gi\|198242551\|ref\|YP_002218064.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|213425732 - gi\|213425732\|ref\|ZP_03358482.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213417732 - gi\|213417732\|ref\|ZP_03350852.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213163866 - gi\|213163866\|ref\|ZP_03349576.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|213022867 - gi\|213022867\|ref\|ZP_03337314.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ente... gi\|194407918, gi... - gi\|194449614\|ref\|YP_002048134.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|194444349, gi... - gi\|194444349\|ref\|YP_002043399.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|168264793, gi... - gi\|205346819\|gb\|EDZ33450.1\| preprotein translocase subunit secE [Salmonella enterica subsp. enterica... gi\|167554341, gi... - gi\|205321447\|gb\|EDZ09286.1\| preprotein translocase subunit secE [Salmonella enterica subsp. enterica... gi\|197364901, gi... - gi\|197364901\|ref\|YP_002144538.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. ent... gi\|62182601, gi\|... - gi\|62182601\|ref\|YP_219018.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... gi\|197212550, gi... - gi\|197248847\|ref\|YP_002149058.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|56415974, gi\|... - gi\|56415974\|ref\|YP_153049.1\| preprotein translocase subunit SecE [Salmonella enterica subsp. enteric... gi\|194735761, gi... - gi\|194735761\|ref\|YP_002117050.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ent... gi\|194469508, gi... - gi\|194469508\|ref\|ZP_03075492.1\| preprotein translocase subunit secE [Salmonella enterica subsp. ente...	9.0E-29	[1..127]	[1..127]
gi\|110617379, gi... - gi\|110807831\|ref\|YP_691351.1\| preprotein translocase subunit SecE [Shigella flexneri 5 str. 8401], g... gi\|30042996, gi\|... - gi\|30064736\|ref\|NP_838907.1\| preprotein translocase subunit SecE [Shigella flexneri 2a str. 2457T], ...	9.0E-28	[1..127]	[1..127]
gi\|81247734, gi\|... - gi\|82546323\|ref\|YP_410270.1\| preprotein translocase subunit SecE [Shigella boydii Sb227], gi\|8124773...	1.0E-27	[1..127]	[1..127]
SECE_ECOL6 - Protein translocase subunit SecE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=s... SECE_ECO57 - Protein translocase subunit SecE OS=Escherichia coli O157:H7 GN=secE PE=3 SV=1 EG10939 - preprotein translocase membrane subunit / SecYEG inner membrane translocon core subunit; preprotein ... gi\|170022016, gi... - gi\|170022016\|ref\|YP_001726970.1\| preprotein translocase subunit SecE [Escherichia coli ATCC 8739], g... gi\|170083441, gi... - gi\|170083441\|ref\|YP_001732761.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12... gi\|170517465, gi... - gi\|170679747\|ref\|YP_001746365.1\| preprotein translocase subunit secE [Escherichia coli SMS-3-5], gi\|... gi\|170770137, gi... - gi\|170770137\|ref\|ZP_02904590.1\| preprotein translocase subunit secE [Escherichia albertii TW07627], ... gi\|187730737, gi... - gi\|187730737\|ref\|YP_001882666.1\| preprotein translocase subunit secE [Shigella boydii CDC 3083-94], ... gi\|188488119, gi... - gi\|188492920\|ref\|ZP_03000190.1\| preprotein translocase, SecE subunit [Escherichia coli 53638], gi\|18... gi\|192954739, gi... - gi\|193071947\|ref\|ZP_03052780.1\| preprotein translocase subunit secE [Escherichia coli E110019], gi\|1... gi\|194420816, gi... - gi\|194440250\|ref\|ZP_03072269.1\| preprotein translocase subunit secE [Escherichia coli 101-1], gi\|194... gi\|189359753, gi... - gi\|189359753\|gb\|EDU78172.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC448... gi\|168777408, gi... - gi\|187767368\|gb\|EDU31212.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC419... gi\|168780364, gi... - gi\|189001848\|gb\|EDU70834.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC407... gi\|189370178, gi... - gi\|189370178\|gb\|EDU88594.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. EC869... gi\|117626245, gi... - gi\|117626245\|ref\|YP_859568.1\| preprotein translocase subunit SecE [Escherichia coli APEC O1], gi\|115... gi\|124531367, gi... - gi\|124531367\|ref\|ZP_01701677.1\| preprotein translocase, SecE subunit [Escherichia coli B], gi\|124498... gi\|15804571, gi\|... - gi\|15804571\|ref\|NP_290612.1\| preprotein translocase subunit SecE [Escherichia coli O157:H7 EDL933], ... EG10939 - preprotein translocase membrane subunit / SecYEG inner membrane translocon core subunit; preprotein ... gi\|73857952, gi\|... - gi\|74314475\|ref\|YP_312894.1\| preprotein translocase subunit SecE [Shigella sonnei Ss046], gi\|7385795... gi\|85676089, gi\|... - gi\|89110058\|ref\|AP_003838.1\| preprotein translocase membrane subunit [Escherichia coli str. K-12 sub... gi\|157163449, gi... - gi\|75197845\|ref\|ZP_00707915.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli HS], g... gi\|75240373, gi\|... - gi\|75240373\|ref\|ZP_00724313.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli F11], ... gi\|218556535, gi... - gi\|218556535\|ref\|YP_002389449.1\| preprotein translocase subunit SecE [Escherichia coli IAI1], gi\|218... gi\|218561047, gi... - gi\|218561047\|ref\|YP_002393960.1\| preprotein translocase subunit SecE [Escherichia coli S88], gi\|2183... gi\|218692262, gi... - gi\|218692262\|ref\|YP_002400474.1\| preprotein translocase subunit SecE [Escherichia coli ED1a], gi\|218... SECE_ECOLI - Preprotein translocase subunit secE - Escherichia coli SECE_ECOL6 - Preprotein translocase subunit secE OS=Escherichia coli O6 GN=secE PE=3 SV=1 gi\|218697688, gi... - gi\|218697688\|ref\|YP_002405355.1\| preprotein translocase subunit SecE [Escherichia coli 55989], gi\|21... gi\|218372597, gi... - gi\|218702611\|ref\|YP_002410240.1\| preprotein translocase subunit SecE [Escherichia coli IAI39], gi\|21... gi\|157155377, gi... - gi\|75188711\|ref\|ZP_00701978.1\| COG0690: Preprotein translocase subunit SecE [Escherichia coli E24377... gi\|218707599, gi... - gi\|218707599\|ref\|YP_002415118.1\| preprotein translocase subunit SecE [Escherichia coli UMN026], gi\|2... gi\|195939606 - gi\|195939606\|ref\|ZP_03084988.1\| preprotein translocase subunit SecE [Escherichia coli O157:H7 str. E... gi\|208808098, gi... - gi\|208808098\|ref\|ZP_03250435.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. E... gi\|208734951, gi... - gi\|208813674\|ref\|ZP_03255003.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. E... gi\|208819192, gi... - gi\|208819192\|ref\|ZP_03259512.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. E... gi\|209396026, gi... - gi\|209396026\|ref\|YP_002273497.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. ... gi\|209914718, gi... - gi\|209921459\|ref\|YP_002295543.1\| preprotein translocase subunit SecE [Escherichia coli SE11], gi\|209... gi\|217322219, gi... - gi\|217325998\|ref\|ZP_03442082.1\| preprotein translocase subunit secE [Escherichia coli O157:H7 str. T... gi\|218551035, gi... - gi\|218551035\|ref\|YP_002384826.1\| preprotein translocase subunit SecE [Escherichia fergusonii ATCC 35... gi\|91212814, gi\|... - gi\|91212814\|ref\|YP_542800.1\| preprotein translocase subunit SecE [Escherichia coli UTI89], gi\|910743... gi\|227837564, gi... - gi\|227885490\|ref\|ZP_04003295.1\| preprotein translocase subunit SecE [Escherichia coli 83972], gi\|227... gi\|226903061, gi... - gi\|237702748\|ref\|ZP_04533229.1\| preprotein translocase subunit SecE [Escherichia sp. 3_2_53FAA], gi\|... gi\|238903037, gi... - gi\|238903037\|ref\|YP_002928833.1\| preprotein translocase membrane subunit [Escherichia coli BW2952], ... gi\|242379511, gi... - gi\|251787238\|ref\|YP_003001542.1\| hypothetical protein B21_03810 [Escherichia coli BL21], gi\|24237951... gi\|253326434, gi... - gi\|254290672\|ref\|YP_003056420.1\| translocase [Escherichia coli BL21(DE3)], gi\|253979979\|gb\|ACT45649.... gi\|226838471, gi... - gi\|254039236\|ref\|ZP_04873285.1\| preprotein translocase membrane subunit [Escherichia sp. 1_1_43], gi... gi\|254163922, gi... - gi\|254163922\|ref\|YP_003047030.1\| translocase [Escherichia coli B str. REL606], gi\|253975823\|gb\|ACT41... gi\|254595379, gi... - gi\|254795979\|ref\|YP_003080816.1\| preprotein translocase membrane subunit [Escherichia coli O157:H7 s... gi\|15834158, gi\|... - gi\|15834158\|ref\|NP_312931.1\| preprotein translocase subunit SecE [Escherichia coli O157:H7 str. Saka... gi\|110345908, gi... - gi\|110644316\|ref\|YP_672046.1\| preprotein translocase subunit SecE [Escherichia coli 536], gi\|1103459...	2.0E-27	[1..127]	[1..127]
gi\|46914947, gi\|... - gi\|54310504\|ref\|YP_131524.1\| preprotein translocase subunit SecE [Photobacterium profundum SS9], gi\|...	4.0E-27	[1..125]	[1..125]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANTEAPGS GRGLETAKWL IVAVLLVVAI VGNYYYREYS LPLRALAVVV IIAVAGAVAL  60
   61 MTAKGKATVA FAREARTEVR KVIWPTRQET LHTTLIVAAV TAVMSLILWG LDGILVRLVS 120
  121 FITGLRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2akhZ
Description:	Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits