YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165992783, gi...
Organism:	Yersinia pestis biovar Antiqua str. E1979001
Length:	355 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165992783, gi....

Description	E-value	Query Range	Subject Range
gi\|22125632, gi\|... - gi\|22125632\|ref\|NP_669055.1\| hypothetical protein y1738 [Yersinia pestis KIM], gi\|21958542\|gb\|AAM853... gi\|45442061, gi\|... - gi\|45442061\|ref\|NP_993600.1\| hypothetical protein YP_2271 [Yersinia pestis biovar Microtus str. 9100...	0.0	[1..355]	[19..373]
gi\|77979982 - gi\|77979982\|ref\|ZP_00835397.1\| COG1054: Predicted sulfurtransferase [Yersinia intermedia ATCC 29909]	0.0	[1..355]	[1..355]
gi\|77974928, gi\|... - gi\|77974928\|ref\|ZP_00830466.1\| COG1054: Predicted sulfurtransferase [Yersinia frederiksenii ATCC 336...	0.0	[1..355]	[1..355]
gi\|77963595, gi\|... - gi\|77963595\|ref\|ZP_00827403.1\| COG1054: Predicted sulfurtransferase [Yersinia mollaretii ATCC 43969]...	0.0	[1..355]	[1..355]
gi\|238783746, gi... - gi\|77958117\|ref\|ZP_00822156.1\| COG1054: Predicted sulfurtransferase [Yersinia bercovieri ATCC 43970]...	0.0	[1..355]	[1..355]
YCEA_ECOHS - UPF0176 protein YceA OS=Escherichia coli O9:H4 (strain HS) GN=yceA PE=3 SV=1 gi\|124498774, gi... - gi\|124531155\|ref\|ZP_01701510.1\| Rhodanese domain protein [Escherichia coli B], gi\|124498774\|gb\|EAY46... YCEA_ECOLC - UPF0176 protein YceA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yceA PE=3 SV=1	0.0	[1..349]	[1..349]
gi\|192957243, gi... - gi\|75235940\|ref\|ZP_00720077.1\| COG1054: Predicted sulfurtransferase [Escherichia coli E110019], gi\|1...	0.0	[1..349]	[1..349]
gi\|30062593, gi\|... - gi\|30062593\|ref\|NP_836764.1\| hypothetical protein S1139 [Shigella flexneri 2a str. 2457T], gi\|300408... gi\|75228324, gi\|... - gi\|75228324\|ref\|ZP_00714974.1\| COG1054: Predicted sulfurtransferase [Escherichia coli B7A], gi\|19116... gi\|193064540, gi... - gi\|75257492\|ref\|ZP_00728995.1\| COG1054: Predicted sulfurtransferase [Escherichia coli E22], gi\|19306... gi\|56479808, gi\|... - gi\|56479808\|ref\|NP_706977.2\| hypothetical protein SF1062 [Shigella flexneri 2a str. 301], gi\|5638335... YCEA_SHIF8 - UPF0176 protein YceA OS=Shigella flexneri serotype 5b (strain 8401) GN=yceA PE=3 SV=1 YCEA_ECO7I - UPF0176 protein YceA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yceA PE=3 SV=1 YCEA_ECO8A - UPF0176 protein YceA OS=Escherichia coli O8 (strain IAI1) GN=yceA PE=3 SV=1 YCEA_ECO55 - UPF0176 protein YceA OS=Escherichia coli (strain 55989 / EAEC) GN=yceA PE=3 SV=1 gi\|194432461, gi... - gi\|83570497\|ref\|ZP_00921941.1\| COG1054: Predicted sulfurtransferase [Shigella dysenteriae 1012], gi\|... YCEA_SHIFL - UPF0176 protein YceA OS=Shigella flexneri GN=yceA PE=3 SV=4 YCEA_ECO24 - UPF0176 protein YceA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yceA PE=3 SV=1 gi\|194428459, gi... - gi\|75210329\|ref\|ZP_00710491.1\| COG1054: Predicted sulfurtransferase [Escherichia coli B171], gi\|1944...	1.0E-99	[1..349]	[1..349]
YCEA_ECO57 - UPF0176 protein YceA OS=Escherichia coli O157:H7 GN=yceA PE=3 SV=1 gi\|15801172, gi\|... - gi\|15801172\|ref\|NP_287189.1\| hypothetical protein Z1691 [Escherichia coli O157:H7 EDL933], gi\|125145... gi\|209773582, gi... - pir\|\|E85667 hypothetical protein yceA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|217318579, gi... - gi\|217328152\|ref\|ZP_03444234.1\| rhodanese domain protein [Escherichia coli O157:H7 str. TW14588], gi... gi\|208815575, gi... - gi\|208815575\|ref\|ZP_03256754.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208728481, gi... - gi\|208808680\|ref\|ZP_03251017.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4206], gi\|... YCEA_ECO5E - UPF0176 protein YceA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yceA PE=3 SV=1 gi\|208738042, gi... - gi\|208822557\|ref\|ZP_03262876.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|13360897, gi\|... - gi\|15830687\|ref\|NP_309460.1\| hypothetical protein ECs1433 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168789990, gi... - gi\|189370468\|gb\|EDU88884.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|254792437, gi... - gi\|254792437\|ref\|YP_003077274.1\| hypothetical protein ECSP_1356 [Escherichia coli O157:H7 str. TW143... gi\|188999112, gi... - gi\|188999112\|gb\|EDU68098.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|195935444 - gi\|195935444\|ref\|ZP_03080826.1\| hypothetical protein EscherichcoliO157_03137 [Escherichia coli O157:... gi\|168802000, gi... - gi\|189375947\|gb\|EDU94363.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC508], gi\|16880... gi\|168764467, gi... - gi\|189365536\|gb\|EDU83952.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|188018044, gi... - gi\|188018044\|gb\|EDU56166.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168773900, gi... - gi\|187770468\|gb\|EDU34312.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189363247, gi... - gi\|189363247\|gb\|EDU81666.1\| rhodanese domain protein [Escherichia coli O157:H7 str. EC4486], gi\|1687...	2.0E-99	[1..349]	[1..349]
gi\|26107595, gi\|... - gi\|26247194\|ref\|NP_753234.1\| hypothetical protein c1321 [Escherichia coli CFT073], gi\|26107595\|gb\|AA...	3.0E-99	[1..349]	[19..367]

Back

Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLHNRISN EELKARMLAE TEPRTTVSFY KYFTLEDAKT FRDNLYSQFV KLGVFGRVYV  60
   61 AKEGINAQIS VPANRYDEFK IALFASHPAL DQVRLNVAHE DDGKSFWVLR LKVRERIVAD 120
  121 GIDDDSFDPA NIGHYLKADQ VNQMIDDPDT LFVDMRNHYE YEVGHFENAI EVPSDTFREQ 180
  181 LPMAVDMLQH DKEKNIVMYC TGGIRCEKAS AYMLHNGFKN VYHVEGGIIE YARKAKEQGL 240
  241 PLKFIGKNFV F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1dp2A
Description:	Rhodanese
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [252-355]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DERMGERISD DVIAHCHQCG TPCDAHTNCK NDGCHLLFIQ CPVCAAKFEG CCSQICQEEL  60
   61 KLPQEEQRSR RAGRENGIKI FNKSKGLLQA TMHIPSPEKS ADEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.391	N/A	N/A	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.354	N/A	N/A	a.29.2	Bromodomain
View	Download	0.335	N/A	N/A	a.29.2	Bromodomain
View	Download	0.323	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.317	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain

Predicted functions:

Term	Confidence	Notes
binding	0.100790573401642	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: