YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|209396580, gi...
Organism:	Escherichia coli O157:H7 str. EC4115
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|209396580, gi....

Description	E-value	Query Range	Subject Range
gi\|50513260 - gi\|50513260\|pdb\|1NY8\|A Chain A, Solution Structure Of Protein Yrba From Escherichia Coli: Northeast ...	122.0	[0..1]	[89..1]
gi\|37527881, gi\|... - gi\|37527881\|ref\|NP_931226.1\| hypothetical protein plu4029 [Photorhabdus luminescens subsp. laumondii... gi\|253991140, gi... - gi\|253991140\|ref\|YP_003042496.1\| transcriptional regulator protein yrba [Photorhabdus asymbiotica], ...	122.0	[0..6]	[89..1]
gi\|85058188, gi\|... - gi\|85058188\|ref\|YP_453890.1\| hypothetical protein SG0210 [Sodalis glossinidius str. 'morsitans'], gi...	120.0	[0..6]	[89..1]
gi\|75209633, gi\|... - gi\|75209633\|ref\|ZP_00709845.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche...	119.0	[0..1]	[89..1]
gi\|77630514, gi\|... - gi\|77630514\|ref\|ZP_00793100.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	119.0	[0..6]	[89..1]
gi\|16504373, gi\|... - gi\|25300382\|pir\|\|AC0904 conserved hypothetical protein STY3487 [imported] - Salmonella enterica subs... gi\|62181816, gi\|... - gi\|62181816\|ref\|YP_218233.1\| BolA family transcriptional regulator [Salmonella enterica subsp. enter... gi\|16762070 - gi\|16762070\|ref\|NP_457687.1\| hypothetical protein STY3487 [Salmonella enterica subsp. enterica serov... gi\|56129494, gi\|... - gi\|56415237\|ref\|YP_152312.1\| hypothetical protein SPA3175 [Salmonella enterica subsp. enterica serov... gi\|16766603, gi\|... - gi\|16766603\|ref\|NP_462218.1\| putative transcriptional regulator [Salmonella typhimurium LT2], gi\|164... gi\|29143559, gi\|... - gi\|29143559\|ref\|NP_806901.1\| hypothetical protein t3225 [Salmonella enterica subsp. enterica serovar... gi\|224585105, gi... - gi\|224585105\|ref\|YP_002638904.1\| hypothetical protein SPC_3378 [Salmonella enterica subsp. enterica ... gi\|214000944 - gi\|214000944\|ref\|ZP_03411679.1\| hypothetical protein Salmonellentericaenterica_10416 [Salmonella ent... gi\|213053030 - gi\|213053030\|ref\|ZP_03345908.1\| hypothetical protein Salmoneentericaenterica_09003 [Salmonella enter... gi\|213028329 - gi\|213028329\|ref\|ZP_03342776.1\| hypothetical protein Salmonelentericaenterica_40940 [Salmonella ente... gi\|207858556, gi... - gi\|207858556\|ref\|YP_002245207.1\| hypothetical protein SEN3141 [Salmonella enterica subsp. enterica s... gi\|205354209, gi... - gi\|205354209\|ref\|YP_002228010.1\| hypothetical protein SG3198 [Salmonella enterica subsp. enterica se... gi\|213973643 - gi\|213973643\|ref\|ZP_03400902.1\| hypothetical protein Salmonellaentericaenterica_02861 [Salmonella en... gi\|213857283 - gi\|213857283\|ref\|ZP_03384254.1\| hypothetical protein SentesT_19080 [Salmonella enterica subsp. enter... gi\|213646985 - gi\|213646985\|ref\|ZP_03377038.1\| hypothetical protein SentesTy_06556 [Salmonella enterica subsp. ente... gi\|213426649 - gi\|213426649\|ref\|ZP_03359399.1\| hypothetical protein SentesTyphi_14168 [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=yrbA] [protein=putative transcriptional regulator] [protein_id=YP_005239487.1] [location=compl... gi\|197364167, gi... - gi\|197364167\|ref\|YP_002143804.1\| hypothetical protein SSPA2963 [Salmonella enterica subsp. enterica ...	119.0	[0..2]	[89..10]
gi\|51597806, gi\|... - gi\|51597806\|ref\|YP_071997.1\| putative BolA/YrbA family protein [Yersinia pseudotuberculosis IP 32953... Q665K3\|Q665K3_YERPS - Putative BolA/YrbA family protein - Yersinia pseudotuberculosis gi\|117672257 - gi\|117672257\|ref\|ZP_01495315.1\| hypothetical protein YpseI_02000418 [Yersinia pseudotuberculosis IP ... gi\|186896998, gi... - gi\|186896998\|ref\|YP_001874110.1\| BolA family protein [Yersinia pseudotuberculosis PB1/+], gi\|1867000... gi\|169749302, gi... - gi\|170022768\|ref\|YP_001719273.1\| BolA family protein [Yersinia pseudotuberculosis YPIII], gi\|1697493...	118.0	[0..6]	[89..4]
gi\|238785103, gi... - gi\|77957469\|ref\|ZP_00821524.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	118.0	[0..6]	[89..1]
gi\|50119260, gi\|... - gi\|50119260\|ref\|YP_048427.1\| putative bolA family protein [Pectobacterium atrosepticum SCRI1043], gi...	118.0	[0..6]	[89..1]
gi\|25300381 - pir\|\|AC0434 BolA-like protein [imported] - Yersinia pestis (strain CO92) gi\|45438425, gi\|... - gi\|45443556\|ref\|NP_995095.1\| BolA-like protein [Yersinia pestis biovar Microtus str. 91001], gi\|4543... gi\|21956808, gi\|... - gi\|22124061\|ref\|NP_667484.1\| morphology/transcription regulator BolA family protein [Yersinia pesti... gi\|108777260, gi... - gi\|108813612\|ref\|YP_649379.1\| BolA-like protein [Yersinia pestis Nepal516], gi\|108777260\|gb\|ABG19779... gi\|15981492, gi\|... - gi\|218930582\|ref\|YP_002348457.1\| BolA-like protein [Yersinia pestis CO92], gi\|16123714\|ref\|NP_407027... gi\|153997345, gi... - gi\|153997345\|ref\|ZP_02022445.1\| BolA-like protein [Yersinia pestis CA88-4125], gi\|149288982\|gb\|EDM39... gi\|145597643, gi... - gi\|145597643\|ref\|YP_001161719.1\| BolA-like protein [Yersinia pestis Pestoides F], gi\|145209339\|gb\|AB... gi\|77635684 - gi\|77635684\|ref\|ZP_00797765.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi... gi\|89102356 - gi\|89102356\|ref\|ZP_01174996.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi... gi\|108809724, gi... - gi\|108809724\|ref\|YP_653640.1\| BolA-like protein [Yersinia pestis Antiqua], gi\|108781637\|gb\|ABG15695....	118.0	[0..6]	[89..4]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEDPMENNE IQSVLMNALS LQEVHVSGDG SHFQVIAVGE LFDGMSRVKK QQTVYGPLME  60
   61 YIADNRIHAV SIKAYTPAEW ARDRKLNGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1ny8A
Description:	Solution structure of Protein yrbA from Escherichia Coli: Northeast Structural Genomics Consortium target ER115
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits