YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|224989425, gi...
Organism:	Mycobacterium bovis BCG str. Tokyo 172
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|224989425, gi....

Description	E-value	Query Range	Subject Range
gi\|219932633, gi... - gi\|221229526\|ref\|YP_002502942.1\| hypothetical protein MLBr_00256 [Mycobacterium leprae Br4923], gi\|2... gi\|15827048 - gi\|15827048\|ref\|NP_301311.1\| hypothetical protein ML0256 [Mycobacterium leprae TN] gi\|25374106, gi\|... - pir\|\|H86940 probable membrane protein [imported] - Mycobacterium leprae, gi\|13092595\|emb\|CAC29764.1\|...	188.0	[0..1]	[208..1]
gi\|41395440, gi\|... - gi\|41407089\|ref\|NP_959925.1\| hypothetical protein MAP0991 [Mycobacterium avium subsp. paratuberculos...	170.0	[0..6]	[205..4]
gi\|38199774 - gi\|38199774\|emb\|CAE49434.1\| Putative membrane protein [Corynebacterium diphtheriae] gi\|38233514 - gi\|38233514\|ref\|NP_939281.1\| hypothetical protein DIP0918 [Corynebacterium diphtheriae NCTC 13129]	156.0	[0..53]	[226..5]
gi\|21221534, gi\|... - gi\|21221534\|ref\|NP_627313.1\| hypothetical protein SCO3095 [Streptomyces coelicolor A3(2)], gi\|102417...	152.0	[0..46]	[199..22]
gi\|152965042, gi... - gi\|69284255\|ref\|ZP_00616203.1\| Septum formation initiator [Kineococcus radiotolerans SRS30216], gi\|6...	148.0	[0..4]	[205..3]
gi\|29830075, gi\|... - gi\|29830075\|ref\|NP_824709.1\| hypothetical protein SAV_3532 [Streptomyces avermitilis MA-4680], gi\|29...	139.0	[0..46]	[202..14]
gi\|19552200, gi\|... - gi\|62389866\|ref\|YP_225268.1\| hypothetical protein cg1112 [Corynebacterium glutamicum ATCC 13032], gi...	138.0	[0..77]	[224..32]
gi\|71914565, gi\|... - gi\|72160833\|ref\|YP_288490.1\| hypothetical protein Tfu_0429 [Thermobifida fusca YX], gi\|71914565\|gb\|A...	133.0	[0..2]	[201..8]
gi\|120405720, gi... - gi\|90201454\|ref\|ZP_01204100.1\| Septum formation initiator [Mycobacterium vanbaalenii PYR-1], gi\|9019...	123.0	[0..1]	[228..1]
gi\|126236983, gi... - gi\|92909444\|ref\|ZP_01278221.1\| Septum formation initiator [Mycobacterium sp. JLS], gi\|92432611\|gb\|EA... gi\|108771622, gi... - gi\|108801203\|ref\|YP_641400.1\| septum formation initiator [Mycobacterium sp. MCS], gi\|108771622\|gb\|AB... gi\|92917086, gi\|... - gi\|92917086\|ref\|ZP_01285701.1\| Septum formation initiator [Mycobacterium sp. KMS], gi\|92438628\|gb\|EA...	121.0	[0..1]	[196..1]

Back

Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEAKRPESK RRSPASRPGK AGDSVRGGRA TKPSAKPSTP APHASRKTTR TPHEHIVEPI  60
   61 KRAITESVEK RSEQR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGFTARRAAI LAAVVCVLTL TIARPVRTYF AQRAEMEQLA ATEAMLRRQI ADLEEQQVKL  60
   61 ADPAYIAAQA RERLGFVMPG DIPFQVQLPS TPLAPPQPGS DAATATNNEP WYTALWHTIA 120
  121 DDPHLPPAAP PAPEPGRPGP LPPASPNPEQ PGG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.346787
Match:	PF04977.6
Description:	No description for PF04977.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits