YRC Public Data Repository - Protein Structure Prediction

Protein:	APAH_ECOSE
Organism:	Escherichia coli SE11
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APAH_ECOSE.

Description	E-value	Query Range	Subject Range
gi\|1003022 - gi\|1003022\|gb\|AAA79340.1\| ApaH gi\|1003022\|gb\|AA... - ApaH	279.0	[0..1]	[280..1]
gi\|188487091, gi... - gi\|75515637\|ref\|ZP_00737794.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_SHISS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella sonnei (strain Ss046) GN=apaH PE=3 SV=1 APAH_ECODH - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain K12 / DH10B) GN=apaH PE=... gi\|83584906, gi\|... - gi\|83584906\|ref\|ZP_00923563.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECO55 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain 55989 / EAEC) GN=apaH PE... APAH_SHIB3 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... APAH_SHIBS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella boydii serotype 4 (strain Sb227) GN=apaH... gi\|85674302, gi\|... - gi\|89106933\|ref\|AP_000713.1\| diadenosine tetraphosphatase [Escherichia coli str. K-12 substr. W3110]... APAH_ECOLI - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A h... gi\|253972075, gi... - gi\|254160174\|ref\|YP_003043282.1\| diadenosinetetraphosphatase [Escherichia coli B str. REL606], gi\|25... EG10048 - diadenosine tetraphosphatase / Dinucleoside tetraphosphatase, symmetrical; diadenosine tetraphosphat... gi\|254037466, gi... - gi\|254037466\|ref\|ZP_04871543.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia sp. 1_1_43], gi\|2268... gi\|253325963, gi... - gi\|254286977\|ref\|YP_003052725.1\| diadenosinetetraphosphatase [Escherichia coli BL21(DE3)], gi\|253976... gi\|251783615, gi... - gi\|251783615\|ref\|YP_002997919.1\| hypothetical protein B21_00052 [Escherichia coli BL21], gi\|24237588... APAH_ECOBW - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... EG10048 - diadenosine tetraphosphatase / Dinucleoside tetraphosphatase, symmetrical; diadenosine tetraphosphat... APAH_ECOLC - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|124531317, gi... - gi\|124531317\|ref\|ZP_01701645.1\| bis(5'nucleosyl)-tetraphosphatase, ApaH [Escherichia coli B], gi\|124...	279.0	[0..1]	[280..1]
gi\|40919 - gi\|40919\|emb\|CAA28416.1\| unnamed protein product [Escherichia coli]	278.0	[0..1]	[280..1]
gi\|195937725 - gi\|195937725\|ref\|ZP_03083107.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. EC4024] gi\|13359510, gi\|... - gi\|15829308\|ref\|NP_308081.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189376016, gi... - gi\|189376016\|gb\|EDU94432.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|208814315, gi... - gi\|208814315\|ref\|ZP_03255644.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia coli O157:H7 str. EC... gi\|208725417, gi... - gi\|208805616\|ref\|ZP_03247953.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O... APAH_ECO5E - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|208739236, gi... - gi\|208819113\|ref\|ZP_03259433.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia coli O157:H7 str. EC... gi\|217320465, gi... - gi\|217324244\|ref\|ZP_03440328.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O... gi\|188014314, gi... - gi\|188014314\|gb\|EDU52436.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... APAH_ECO57 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O157:H7 GN=apaH PE=3 SV=1 gi\|168762815, gi... - gi\|189366966\|gb\|EDU85382.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168756879, gi... - gi\|189356059\|gb\|EDU74478.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168776971, gi... - gi\|187767712\|gb\|EDU31556.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168766743, gi... - gi\|189364224\|gb\|EDU82643.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168785106, gi... - gi\|189374911\|gb\|EDU93327.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|189000772, gi... - gi\|189000772\|gb\|EDU69758.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|209746922, gi... - pir\|\|F90635 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (EC 3.6.1.41) [similarity] - Escherichi... gi\|12512744, gi\|... - gi\|15799734\|ref\|NP_285746.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|254590588, gi... - gi\|254791188\|ref\|YP_003076025.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. TW14359... gi\|75227577, gi\|... - gi\|75227577\|ref\|ZP_00714332.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr...	278.0	[0..1]	[279..1]
gi\|191174116, gi... - gi\|75237156\|ref\|ZP_00721204.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECO81 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O81 (strain ED1a) GN=apaH PE=3 S... APAH_ECOL5 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G...	277.0	[0..1]	[279..1]
gi\|193070990, gi... - gi\|75234138\|ref\|ZP_00718542.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr...	276.0	[0..1]	[279..1]
APAH_ECO45 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=a... APAH_ECOUT - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain UTI89 / UPEC) GN=apaH PE... gi\|226902107, gi... - gi\|237704195\|ref\|ZP_04534676.1\| diadenosine tetraphosphatase [Escherichia sp. 3_2_53FAA], gi\|2269021... APAH_ECOK1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O1:K1 / APEC GN=apaH PE=3 SV=1	276.0	[0..1]	[279..1]
APAH_ECOL6 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... APAH_ECO27 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... APAH_ECOL6 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6 GN=apaH PE=3 SV=1 gi\|227885050, gi... - gi\|227885050\|ref\|ZP_04002855.1\| diadenosine tetraphosphatase [Escherichia coli 83972], gi\|227837879\|... sp\|B7UI97\|APAH_ECO27 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	276.0	[0..1]	[279..1]
APAH_SHIDS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	274.0	[0..1]	[279..1]
gi\|199603803, gi... - gi\|200386705\|ref\|ZP_03213317.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enter... gi\|204926965, gi... - gi\|204926965\|ref\|ZP_03218167.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enter... APAH_SALG2 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella gallinarum (strain 287/91 / NCTC 13346... APAH_SALEP - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella enteritidis PT4 (strain P125109) GN=ap... gi\|194458790, gi... - gi\|194472426\|ref\|ZP_03078410.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Salmonella enteric... APAH_SALA4 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella agona (strain SL483) GN=apaH PE=3 SV=1 APAH_SALTY - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella typhimurium GN=apaH PE=3 SV=1 gi\|197239947, gi... - gi\|197261692\|ref\|ZP_03161766.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Salmonella enteric... APAH_SALTY - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella typhimurium GN=apaH PE=3 SV=1 APAH_SALDC - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella dublin (strain CT_02021853) GN=apaH PE... gi\|168464368, gi... - gi\|195632578\|gb\|EDX51032.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Salmonella enterica su... gi\|205342401, gi... - gi\|205342401\|gb\|EDZ29165.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enterica ... APAH_SALNS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella newport (strain SL254) GN=apaH PE=3 SV... APAH_SALHS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella heidelberg (strain SL476) GN=apaH PE=3... gi\|205331340, gi... - gi\|205331340\|gb\|EDZ18104.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enterica ... gi\|168230357, gi... - gi\|205335184\|gb\|EDZ21948.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enterica ... gi\|168243505, gi... - gi\|205337507\|gb\|EDZ24271.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enterica ... gi\|205348691, gi... - gi\|205348691\|gb\|EDZ35322.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enterica ... gi\|214001250 - gi\|214001250\|ref\|ZP_03411985.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica se... gi\|213029738 - gi\|213029738\|ref\|ZP_03344185.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica se... gi\|213427531 - gi\|213427531\|ref\|ZP_03360281.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica se... gi\|213648898 - gi\|213648898\|ref\|ZP_03378951.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica se... gi\|213863080 - gi\|213863080\|ref\|ZP_03386335.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica se... gi\|16759083 - gi\|16759083\|ref\|NP_454700.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica serov... APAH_SALPB - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... lcl\|NC_016856.1_... - [gene=apaH] [protein=diadenosine tetraphosphatase] [protein_id=YP_005235740.1] [location=complement(... gi\|238911146 - gi\|238911146\|ref\|ZP_04654983.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica se... APAH_SALPB - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... gi\|205324444, gi... - gi\|205324444\|gb\|EDZ12283.1\| bis(5'-nucleosyl)-tetraphosphatase [Salmonella enterica subsp. enterica ... APAH_SALTY - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... gi\|29140633, gi\|... - gi\|29140633\|ref\|NP_803975.1\| diadenosine tetraphosphatase [Salmonella enterica subsp. enterica serov... APAH_SALTI - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella typhi GN=apaH PE=3 SV=1 APAH_SALTI - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella typhi GN=apaH PE=3 SV=1	267.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYLIGDVH GCYDELIALL HKVEFTPGKD TLWLTGDLVA RGPGSLDVLR YVKSLGDSVR  60
   61 LVLGNHDLHL LAVFAGISRN KPKDRLTPLL EAPDADELLN WLRRQPLLQI DEEKKLVMAH 120
  121 AGITPQWDLQ TAKECARDVE AVLSSDSYPF FLDAMYGDMP NNWSPELRGL GRLRFITNAF 180
  181 TRMRFCFPNG QLDMYSKESP EEAPAPLKPW FAIPGPVAEE YSIAFGHWAS LEGKGTPEGI 240
  241 YALDTGCCWG GSLTCLRWED KQYFVQPSNR HKDLGEAAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.39794
Match:	2dfjA
Description:	No description for 2dfjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits